(Q27933913)

19158363

1 December 2016

title

High-resolution DNA-binding specificity analysis of yeast transcription factors (English)

1 reference

PubMed

1 December 2016

Federico De Masi

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Rachel Patton McCord

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Martha L Bulyk

object named as

Martha L Bulyk

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author name string

Cong Zhu

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Kelsey J R P Byers

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Zhenwei Shi

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Michael F Berger

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Daniel E Newburger

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Katrina Saulrieta

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Zachary Smith

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Mita V Shah

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Mathangi Radhakrishnan

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Anthony A Philippakis

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Yanhui Hu

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Marcin Pacek

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Andreas Rolfs

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Tal Murthy

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Joshua Labaer

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language of work or name

English

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publication date

April 2009

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1 reference

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

1 December 2016

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556-66

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cites work

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains

20 March 2017

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RSC, an essential, abundant chromatin-remodeling complex

20 March 2017

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Genome-wide location and function of DNA binding proteins

20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

20 March 2017

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Genome-wide mapping of in vivo protein-DNA interactions

7 April 2017

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TRANSFAC: transcriptional regulation, from patterns to profiles

7 April 2017

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

7 April 2017

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A global map of p53 transcription-factor binding sites in the human genome

7 April 2017

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Genome-wide map of nucleosome acetylation and methylation in yeast

7 April 2017

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Serial regulation of transcriptional regulators in the yeast cell cycle

7 April 2017

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Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

7 April 2017

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Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

7 April 2017

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Design of compact, universal DNA microarrays for protein binding microarray experiments

29 September 2017

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Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

29 September 2017

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Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms

29 September 2017

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Connecting protein structure with predictions of regulatory sites.

29 September 2017

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Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae

29 September 2017

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DNA microarray technologies for measuring protein-DNA interactions

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Extensive low-affinity transcriptional interactions in the yeast genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

A systems approach to mapping DNA damage response pathways

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Yeast Nhp6A/B and mammalian Hmgb1 facilitate the maintenance of genome stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Characterizing gene sets with FuncAssociate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Proteome-scale purification of human proteins from bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Quantifying DNA-protein interactions by double-stranded DNA arrays.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

DNA sequence preferences of GAL4 and PPR1: how a subset of Zn2 Cys6 binuclear cluster proteins recognizes DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Determinants of binding-site specificity among yeast C6 zinc cluster proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Inferring condition-specific transcription factor function from DNA binding and gene expression data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

A linker region of the yeast zinc cluster protein leu3p specifies binding to everted repeat DNA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

RPC19, the gene for a subunit common to yeast RNA polymerases A (I) and C (III).

2 June 2018

1 reference

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Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

Predicting gene expression from sequence

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665775

27 November 2018

Identifiers

DOI

10.1101/GR.090233.108

1 reference

1 reference

1 reference

19158363

1 reference