(Q27499387)

22 June 2017

title

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence (English)

1 reference

22 June 2017

Mus musculus

1 reference

1 reference

22 June 2017

1 reference

22 June 2017

Trupti Joshi

0 references

Frederick P Roth

0 references

Judith A Blake

0 references

Judith Klein-Seetharaman

object named as

Judith Klein-Seetharaman

0 references

Wan Kyu Kim

0 references

Sara Mostafavi

1 reference

22 June 2017

Olga G Troyanskaya

1 reference

22 June 2017

Quaid Morris

0 references

Edward M Marcotte

0 references

Chao Zhang

0 references

Michael I Jordan

1 reference

22 June 2017

David Warde-Farley

1 reference

22 June 2017

author name string

Lourdes Peña-Castillo

1 reference

22 June 2017

Murat Tasan

1 reference

22 June 2017

Chad L Myers

1 reference

22 June 2017

Hyunju Lee

1 reference

22 June 2017

Yuanfang Guan

1 reference

22 June 2017

Michele Leone

1 reference

22 June 2017

Chase Krumpelman

1 reference

22 June 2017

Weidong Tian

1 reference

22 June 2017

Guillaume Obozinski

1 reference

22 June 2017

Yanjun Qi

1 reference

22 June 2017

Guan Ning Lin

1 reference

22 June 2017

Gabriel F Berriz

1 reference

22 June 2017

Francis D Gibbons

1 reference

22 June 2017

Gert Lanckriet

1 reference

22 June 2017

Jian Qiu

1 reference

22 June 2017

Charles Grant

1 reference

22 June 2017

Zafer Barutcuoglu

1 reference

22 June 2017

David P Hill

1 reference

22 June 2017

Chris Grouios

1 reference

22 June 2017

Debajyoti Ray

1 reference

22 June 2017

Minghua Deng

1 reference

22 June 2017

William S Noble

1 reference

22 June 2017

Ting Chen

1 reference

22 June 2017

Fengzhu Sun

1 reference

22 June 2017

Dong Xu

1 reference

22 June 2017

Timothy R Hughes

1 reference

22 June 2017

publication date

27 June 2008

1 reference

22 June 2017

1 reference

22 June 2017

volume

9 Suppl 1

1 reference

22 June 2017

issue

Suppl 1

0 references

page(s)

1 reference

22 June 2017

cites work

A Mouse for All Reasons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Database resources of the National Center for Biotechnology Information

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Discovery of biological networks from diverse functional genomic data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Pfam: clans, web tools and services

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Inparanoid: a comprehensive database of eukaryotic orthologs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

InterPro, progress and status in 2005

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

The functional landscape of mouse gene expression

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A gene atlas of the mouse and human protein-encoding transcriptomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Gene ontology: tool for the unification of biology

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A panoramic view of yeast noncoding RNA processing

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

EnsMart: a generic system for fast and flexible access to biological data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Network motifs: simple building blocks of complex networks

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A combined algorithm for genome-wide prediction of protein function

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Computational protein function prediction: are we making progress?

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

29 September 2017

Gene trap mutagenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

The mouse genome database (MGD): new features facilitating a model system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Finding function: evaluation methods for functional genomic data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

VIRGO: computational prediction of gene functions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Gene prioritization through genomic data fusion

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Hierarchical multi-label prediction of gene function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Assessing the limits of genomic data integration for predicting protein networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Online predicted human interaction database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A statistical framework for genomic data fusion

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Whole-genome annotation by using evidence integration in functional-linkage networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Predicting protein function from protein/protein interaction data: a probabilistic approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Computational analyses of high-throughput protein-protein interaction data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Predicting gene function by conserved co-expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Treasures and traps in genome-wide data sets: case examples from yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Accurate prediction of protein functional class from sequence in the Mycobacterium tuberculosis and Escherichia coli genomes using data mining

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

A method of comparing the areas under receiver operating characteristic curves derived from the same cases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

The art of gene function prediction.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Diffusion kernel-based logistic regression models for protein function prediction

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Functional bioinformatics for Arabidopsis thaliana.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Predicting protein functions with message passing algorithms

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Modulation of T cell development and activation by novel members of the Schlafen (slfn) gene family harbouring an RNA helicase-like motif.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Systems biology. Life's complexity pyramid.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447536

Gene function on a genomic scale

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18613946

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2008-9-S1-S2

1 reference

Dimensions Publication ID

22 June 2017

1039025062

0 references

OpenCitations bibliographic resource ID

2505812

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2505812

1 reference