Background Local breeds retained unique genetic variability important for adaptive potential espe... more Background Local breeds retained unique genetic variability important for adaptive potential especially in light of challenges related to climate change. Our first objective was to perform, for the first time, a genome-wide diversity characterization using Illumina GoatSNP50 BeadChip of autochthonous Drežnica goat breed from Slovenia, and five and one local breeds from neighboring Austria and Italy, respectively. For optimal conservation and breeding programs of endangered local breeds, it is important to detect past admixture events and strive for preservation of purebred representatives of each breed with low or without admixture. In the second objective, we hence investigated the effect of inclusion or exclusion of outliers from datasets on genetic diversity and population structure parameters. Results Distinct genetic origin of the Drežnica goat was demonstrated as having closest nodes to Austrian and Italian breeds. A phylogenetic study of these breeds with other goat breeds ha...
The aim of the present study was to identify genomic region(s) associated with the length of the ... more The aim of the present study was to identify genomic region(s) associated with the length of the calving interval in primiparous (n = 6866) and multiparous (n = 5071) Holstein cows. The single nucleotide polymorphism (SNP) solutions were estimated using a weighted single-step genomic best linear unbiased prediction (WssGBLUP) approach and imputed high-density panel (777 k) genotypes. The effects of markers and the genomic estimated breeding values (GEBV) of the animals were obtained by five iterations of WssGBLUP. The results showed that the accuracies of GEBVs with WssGBLUP improved by +5.4 to +5.7, (primiparous cows) and +9.4 to +9.7 (multiparous cows) percent points over accuracies from the pedigree-based BLUP. The most accurate genomic evaluation was provided at the second iteration of WssGBLUP, which was used to identify associated genomic regions using a windows-based GWAS procedure. The proportion of additive genetic variance explained by windows of 50 consecutive SNPs (with ...
... The proportion of breeding ewes in this particular finding is similar to 47.0% reported by (S... more ... The proportion of breeding ewes in this particular finding is similar to 47.0% reported by (Solomon et al., 2005). However, lower than reported by Berhanu (1995) at 54.4% in southwestern Ethio-pia under farmers management conditions. ... Berhanu Belay, 1995. ...
Abstract This study aimed to investigate the relationship between body condition score (BCS), cal... more Abstract This study aimed to investigate the relationship between body condition score (BCS), calving interval (CI), angularity (ANG), strength (FV) and milk yield (MY) on Brown Swiss cattle using data collected in the alpine provinces of Bolzano-Bozen and Trentino. The data set consisted of 28,538 test day records of BCS and MY from 3,282 Brown Swiss cows in lactation reared in 109 herds; production traits were merged with 13,796 repeated individual calving interval records and 38,711 type traits records. A multi-traits REML animal model was used to estimate (co)variance components, with repeated observations. Heritability estimates for BCS, FV and ANG was 18%, 18% and 27%, respectively, while estimates for CI was very low (2%). Genetic correlations between CI and BCS was -0.44; between BCS and ANG was -0.64; between BCS and MY was -0.35; between ANG and CI was 0.12. In conclusion, the selection for MY and ANG negatively affect fertility and average condition score of Brown cows. BCS recorded during lactation could be proposed as a useful trait for indirect selection aimed to improve fertility of cows.
Background Local breeds retained unique genetic variability important for adaptive potential espe... more Background Local breeds retained unique genetic variability important for adaptive potential especially in light of challenges related to climate change. Our first objective was to perform, for the first time, a genome-wide diversity characterization using Illumina GoatSNP50 BeadChip of autochthonous Drežnica goat breed from Slovenia, and five and one local breeds from neighboring Austria and Italy, respectively. For optimal conservation and breeding programs of endangered local breeds, it is important to detect past admixture events and strive for preservation of purebred representatives of each breed with low or without admixture. In the second objective, we hence investigated the effect of inclusion or exclusion of outliers from datasets on genetic diversity and population structure parameters. Results Distinct genetic origin of the Drežnica goat was demonstrated as having closest nodes to Austrian and Italian breeds. A phylogenetic study of these breeds with other goat breeds ha...
The aim of the present study was to identify genomic region(s) associated with the length of the ... more The aim of the present study was to identify genomic region(s) associated with the length of the calving interval in primiparous (n = 6866) and multiparous (n = 5071) Holstein cows. The single nucleotide polymorphism (SNP) solutions were estimated using a weighted single-step genomic best linear unbiased prediction (WssGBLUP) approach and imputed high-density panel (777 k) genotypes. The effects of markers and the genomic estimated breeding values (GEBV) of the animals were obtained by five iterations of WssGBLUP. The results showed that the accuracies of GEBVs with WssGBLUP improved by +5.4 to +5.7, (primiparous cows) and +9.4 to +9.7 (multiparous cows) percent points over accuracies from the pedigree-based BLUP. The most accurate genomic evaluation was provided at the second iteration of WssGBLUP, which was used to identify associated genomic regions using a windows-based GWAS procedure. The proportion of additive genetic variance explained by windows of 50 consecutive SNPs (with ...
... The proportion of breeding ewes in this particular finding is similar to 47.0% reported by (S... more ... The proportion of breeding ewes in this particular finding is similar to 47.0% reported by (Solomon et al., 2005). However, lower than reported by Berhanu (1995) at 54.4% in southwestern Ethio-pia under farmers management conditions. ... Berhanu Belay, 1995. ...
Abstract This study aimed to investigate the relationship between body condition score (BCS), cal... more Abstract This study aimed to investigate the relationship between body condition score (BCS), calving interval (CI), angularity (ANG), strength (FV) and milk yield (MY) on Brown Swiss cattle using data collected in the alpine provinces of Bolzano-Bozen and Trentino. The data set consisted of 28,538 test day records of BCS and MY from 3,282 Brown Swiss cows in lactation reared in 109 herds; production traits were merged with 13,796 repeated individual calving interval records and 38,711 type traits records. A multi-traits REML animal model was used to estimate (co)variance components, with repeated observations. Heritability estimates for BCS, FV and ANG was 18%, 18% and 27%, respectively, while estimates for CI was very low (2%). Genetic correlations between CI and BCS was -0.44; between BCS and ANG was -0.64; between BCS and MY was -0.35; between ANG and CI was 0.12. In conclusion, the selection for MY and ANG negatively affect fertility and average condition score of Brown cows. BCS recorded during lactation could be proposed as a useful trait for indirect selection aimed to improve fertility of cows.
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