Galaxy Community Help

Topic	Replies	Views	Activity
What should I do if my data exceeds the given 250GB of storage? account , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	336	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10321	April 17, 2024
Trinity assembly failure tool-help , trinity	0	2	October 16, 2024
Is CD-HIT-EST no longer available? usegalaxy.org support transcriptomics	0	2	October 16, 2024
Tool wrapping with Hydra config files -- not CLI arguments -- driving the Python code tool-dev	3	96	October 16, 2024
Align.seq Error 153 usegalaxy.eu support	0	2	October 16, 2024
HISAT2 output error	0	6	October 16, 2024
Database upgrade error server-admin , galaxy-local	0	3	October 16, 2024
plotCoverage bin count names usegalaxy.org support relabel-collection , collections , tool-help	1	4	October 15, 2024
PhyloseqR not showed up, not working server-open-issue , tool-help , interactive_tool_phyloseq	7	12	October 15, 2024
Normalizing RNA-seq with RUVIII - PRPS transcriptomics , tool-help , ruvseq	1	5	October 15, 2024
Kraken functionality in MultiQC tool-dev	1	5	October 15, 2024
Help me with the error on mem bwa usegalaxy.org support gtn-tutorial , troubleshooting , bwa-mem , tool-help	1	3	October 15, 2024
Mirdeeper2 still have problem	2	4	October 15, 2024
Error in GROMACS solvation and ading ions gtn-tutorial , comp-chemistry , gromacs	1	3	October 15, 2024
Mirdeeper2 quantifier and Mirdeeper identication tools does not work(get errors rbc_mirdeep2	3	6	October 15, 2024
Error while exporting a history galaxy-local	5	26	October 15, 2024
Insecure HTTP method: PUT on my local Galaxy instance galaxy-local	4	16	October 15, 2024
Error with make.contigs tool in 16s microbial analysis with mothur tuto usegalaxy.eu support gtn-tutorial , troubleshooting , metagenomics , mothur	15	25	October 15, 2024
could you make KMC from the toolshed (available Galaxy Australia) also available in usegalaxy.eu? usegalaxy.eu support	24	58	October 14, 2024
Variant calling with VarScan on WGS data usegalaxy.org support workflow , mapping , tool-help , variant-analysis , varscan	5	21	October 12, 2024
How to get log fold change for individual samples? usegalaxy.org support gtn-tutorial , transcriptomics	4	127	October 11, 2024
Want to retrieve all bacterial sequences from whole genome gtn-tutorial	3	12	October 11, 2024
BBduk filter and trim options tool-help , bbtools_bbduk	2	11	October 10, 2024
Memory quota discrepency account , storage-dashboard	4	18	October 10, 2024
NCBI BLAST+ blastx custom-genome , mapping , tool-help , ncbi_blastx_wrapper	1	13	October 10, 2024
Can users increase the number of threads used for jobs? usegalaxy.eu support mapping	1	14	October 10, 2024
Check for Genes existence in a FASTA file troubleshooting	1	7	October 9, 2024
Unable to unzip file after Downloading Reference genome from NCBI fasta-manipulation	3	17	October 9, 2024
BiG-SCAPE job submission failed usegalaxy.eu support bigscape	3	12	October 9, 2024

What should I do if my data exceeds the given 250GB of storage?

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

336

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10321

April 17, 2024

Trinity assembly failure

tool-help , trinity