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619 lines (594 loc) · 25 KB
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#!/usr/bin/env groovy
@Library('StanUtils')
import org.stan.Utils
def runTests(String testPath, boolean jumbo = false) {
try {
sh "cat make/local"
sh "make print-compiler-flags"
if (jumbo && !params.disableJumbo) {
sh "python3 runTests.py -j${PARALLEL} ${testPath} --jumbo --debug"
} else {
sh "python3 runTests.py -j${PARALLEL} ${testPath}"
}
}
finally { junit 'test/**/*.xml' }
}
def skipRemainingStages = false
def changedDistributionTests = []
def utils = new org.stan.Utils()
def isBranch(String b) { env.BRANCH_NAME == b }
String alsoNotify() {
if (isBranch('master') || isBranch('develop')) {
"stan-buildbot@googlegroups.com"
} else ""
}
Boolean isPR() { env.CHANGE_URL != null }
String fork() { env.CHANGE_FORK ?: "stan-dev" }
String branchName() { isPR() ? env.CHANGE_BRANCH :env.BRANCH_NAME }
String cmdstan_pr() { params.cmdstan_pr ?: ( env.CHANGE_TARGET == "master" ? "downstream_hotfix" : "downstream_tests" ) }
String stan_pr() { params.stan_pr ?: ( env.CHANGE_TARGET == "master" ? "downstream_hotfix" : "downstream_tests" ) }
pipeline {
agent none
parameters {
string(defaultValue: '', name: 'cmdstan_pr', description: 'PR to test CmdStan upstream against e.g. PR-630')
string(defaultValue: '', name: 'stan_pr', description: 'PR to test Stan upstream against e.g. PR-630')
booleanParam(defaultValue: false, name: 'withRowVector', description: 'Run additional distribution tests on RowVectors (takes 5x as long)')
booleanParam(defaultValue: false, name: 'disableJumbo', description: 'Disable Jumbo tests. This takes longer and should only be used for debugging if it is believed that the jumbo tests are causing failures.')
booleanParam(defaultValue: false, name: 'optimizeUnitTests', description: 'Use O=3 for unit tests (takex ~3x as long)')
booleanParam(defaultValue: false, name: 'runAllDistributions', description: 'Run all distribution tests, even ones which are unchanged compared to develop')
}
options {
skipDefaultCheckout()
preserveStashes(buildCount: 7)
parallelsAlwaysFailFast()
buildDiscarder(logRotator(numToKeepStr: '20', daysToKeepStr: '30'))
disableConcurrentBuilds(abortPrevious: true)
}
environment {
STAN_NUM_THREADS = 4
CLANG_CXX = 'clang++-7'
GCC = 'g++'
MPICXX = 'mpicxx.openmpi'
N_TESTS = 100
OPENCL_DEVICE_ID = 0
OPENCL_DEVICE_ID_CPU = 0
OPENCL_DEVICE_ID_GPU = 0
OPENCL_PLATFORM_ID = 1
OPENCL_PLATFORM_ID_CPU = 0
OPENCL_PLATFORM_ID_GPU = 0
GIT_AUTHOR_NAME = 'Stan Jenkins'
GIT_AUTHOR_EMAIL = 'mc.stanislaw@gmail.com'
GIT_COMMITTER_NAME = 'Stan Jenkins'
GIT_COMMITTER_EMAIL = 'mc.stanislaw@gmail.com'
}
stages {
stage("Clang-format") {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
retry(3) { checkout scm }
withCredentials([usernamePassword(credentialsId: 'a630aebc-6861-4e69-b497-fd7f496ec46b',
usernameVariable: 'GIT_USERNAME', passwordVariable: 'GIT_PASSWORD')]) {
sh """#!/bin/bash
set -x
git checkout -b ${branchName()}
clang-format --version
find stan test -name '*.hpp' -o -name '*.cpp' | xargs -n20 -P${PARALLEL} clang-format -i
if [[ `git diff` != "" ]]; then
git add stan test
git commit -m "[Jenkins] auto-formatting by `clang-format --version`"
git push https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/${fork()}/math.git ${branchName()}
echo "Exiting build because clang-format found changes."
echo "Those changes are now found on stan-dev/math under branch ${branchName()}"
echo "Please 'git pull' before continuing to develop."
exit 1
fi"""
}
}
post {
always { deleteDir() }
failure {
script {
emailext (
subject: "[StanJenkins] Autoformattted: Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]'",
body: "Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]' " +
"has been autoformatted and the changes committed " +
"to your branch, if permissions allowed." +
"Please pull these changes before continuing." +
"\n\n" +
"See https://github.com/stan-dev/stan/wiki/Coding-Style-and-Idioms" +
" for setting up the autoformatter locally.\n"+
"(Check console output at ${env.BUILD_URL})",
recipientProviders: [[$class: 'RequesterRecipientProvider']],
to: "${env.CHANGE_AUTHOR_EMAIL}"
)
}
}
}
}
stage('Linting & Doc checks') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
script {
retry(3) { checkout scm }
sh "git clean -xffd"
stash 'MathSetup'
sh "echo CXX=${CLANG_CXX} > make/local"
sh "echo BOOST_PARALLEL_JOBS=${PARALLEL} >> make/local"
parallel(
CppLint: { sh "make cpplint" },
Dependencies: { sh """#!/bin/bash
set -o pipefail
make test-math-dependencies 2>&1 | tee dependencies.log""" } ,
Documentation: { sh "make doxygen" },
)
}
}
post {
always {
recordIssues(
enabledForFailure: true,
tools: [cppLint(),groovyScript(parserId: 'mathDependencies', pattern: '**/dependencies.log')]
)
deleteDir()
}
}
}
stage('Verify changes') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
script {
retry(3) { checkout scm }
sh 'git clean -xffd'
def paths = ['stan', 'make', 'lib', 'test', 'runTests.py', 'runChecks.py', 'makefile', 'Jenkinsfile', '.clang-format'].join(" ")
skipRemainingStages = utils.verifyChanges(paths)
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Quick tests') {
when {
expression {
!skipRemainingStages
}
}
failFast true
parallel {
stage('Headers check') {
when {
expression {
!skipRemainingStages
}
}
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
retry(1){
unstash 'MathSetup'
sh "echo CXX=${CLANG_CXX} -Werror > make/local"
sh "make -j${PARALLEL} test-headers"
}
}
post { always { deleteDir() } }
}
stage('Run changed unit tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
args '--cap-add SYS_PTRACE'
}
}
when {
allOf {
expression {
env.BRANCH_NAME ==~ /PR-\d+/
}
expression {
!skipRemainingStages
}
}
}
steps {
retry(3) { checkout scm }
sh "echo O=3 >> make/local"
sh "echo CXXFLAGS+=-march=native -mtune=native >> make/local"
sh "./runTests.py -j${PARALLEL} --changed --debug"
}
post { always { retry(3) { deleteDir() } } }
}
}
}
stage('Full Unit Tests') {
when {
expression {
!skipRemainingStages
}
}
failFast true
parallel {
stage('Rev/Fwd Unit Tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
args '--cap-add SYS_PTRACE'
}
}
when {
expression {
!skipRemainingStages
}
}
steps {
unstash 'MathSetup'
sh "echo CXXFLAGS += -fsanitize=address >> make/local"
script {
if (!(params.optimizeUnitTests || isBranch('develop') || isBranch('master'))) {
sh "echo O=0 >> make/local"
}
runTests("test/unit/math/rev")
runTests("test/unit/math/fwd")
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Mix Unit Tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux && 8core'
args '--cap-add SYS_PTRACE'
}
}
when {
expression {
!skipRemainingStages
}
}
steps {
unstash 'MathSetup'
sh "echo CXXFLAGS += -fsanitize=address >> make/local"
script {
if (!(params.optimizeUnitTests || isBranch('develop') || isBranch('master'))) {
sh "echo O=1 >> make/local"
}
runTests("test/unit/math/mix", true)
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Prim Unit Tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
args '--cap-add SYS_PTRACE'
}
}
when {
expression {
!skipRemainingStages
}
}
steps {
unstash 'MathSetup'
sh "echo CXXFLAGS += -fsanitize=address >> make/local"
script {
if (!(params.optimizeUnitTests || isBranch('develop') || isBranch('master'))) {
sh "echo O=0 >> make/local"
}
runTests("test/unit/*_test.cpp", false)
runTests("test/unit/math/*_test.cpp", false)
runTests("test/unit/math/prim", true)
runTests("test/unit/math/memory", false)
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Laplace Unit Tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
args '--cap-add SYS_PTRACE'
}
}
when {
expression {
!skipRemainingStages
}
}
steps {
unstash 'MathSetup'
sh "echo CXXFLAGS += -march=native -mtune=native >> make/local"
sh "echo O=3 >> make/local"
script {
if (params.optimizeUnitTests || isBranch('develop') || isBranch('master')) {
sh "echo CXXFLAGS += -fsanitize=address >> make/local"
}
runTests("test/unit/math/laplace/*_test.cpp", false)
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('OpenCL GPU tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'v100'
args '--gpus 1'
}
}
steps {
script {
unstash 'MathSetup'
sh """
echo CXX=${CLANG_CXX} -Werror > make/local
echo STAN_OPENCL=true >> make/local
echo OPENCL_PLATFORM_ID=${OPENCL_PLATFORM_ID_GPU} >> make/local
echo OPENCL_DEVICE_ID=${OPENCL_DEVICE_ID_GPU} >> make/local
"""
if (!(params.optimizeUnitTests || isBranch('develop') || isBranch('master'))) {
sh "echo O=1 >> make/local"
}
runTests("test/unit/math/opencl", false) // TODO(bward): try to enable
runTests("test/unit/multiple_translation_units_test.cpp")
}
}
post { always { retry(3) { deleteDir() } } }
}
}
}
stage('Always-run tests') {
when {
expression {
!skipRemainingStages
}
}
failFast true
parallel {
stage('MPI tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
unstash 'MathSetup'
sh """
echo CXX=${MPICXX} > make/local
echo CXX_TYPE=gcc >> make/local
echo STAN_MPI=true >> make/local
"""
runTests("test/unit/math/prim/functor")
runTests("test/unit/math/rev/functor")
}
post { always { retry(3) { deleteDir() } } }
}
stage('Expressions test') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
unstash 'MathSetup'
script {
sh "echo O=0 > make/local"
sh "echo CXX=${CLANG_CXX} -Werror >> make/local"
sh "python ./test/code_generator_test.py"
sh "python ./test/signature_parser_test.py"
sh "python ./test/statement_types_test.py"
sh "python ./test/varmat_compatibility_summary_test.py"
sh "python ./test/varmat_compatibility_test.py"
withEnv(['PATH+TBB=./lib/tbb']) {
sh "python ./test/expressions/test_expression_testing_framework.py"
sh "cat make/local"
try { sh "./runTests.py -j${PARALLEL} test/expressions" }
finally { junit 'test/**/*.xml' }
}
sh "make clean-all"
sh "echo STAN_THREADS=true >> make/local"
withEnv(['PATH+TBB=./lib/tbb']) {
try {
sh "cat make/local"
sh "./runTests.py -j${PARALLEL} test/expressions --only-functions reduce_sum map_rect"
}
finally { junit 'test/**/*.xml' }
}
}
}
post { always { deleteDir() } }
}
stage('Threading tests') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
script {
retry(1){
unstash 'MathSetup'
sh "echo CXX=${CLANG_CXX} -Werror > make/local"
sh "echo STAN_THREADS=true >> make/local"
sh "export STAN_NUM_THREADS=4"
if (isBranch('develop') || isBranch('master')) {
runTests("test/unit")
sh "find . -name *_test.xml | xargs rm"
} else {
runTests("test/unit -f thread")
sh "find . -name *_test.xml | xargs rm"
runTests("test/unit -f map_rect")
sh "find . -name *_test.xml | xargs rm"
runTests("test/unit -f reduce_sum")
}
}
}
}
post { always { retry(3) { deleteDir() } } }
}
}
}
stage ('Discover changed distribution tests') {
when {
expression {
!skipRemainingStages
}
}
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
steps {
script {
retry(3) { checkout scm }
if (params.runAllDistributions || isBranch('develop') || isBranch('master')) {
changedDistributionTests = sh(script:"python3 test/prob/getDependencies.py --pretend-all", returnStdout:true).trim().readLines()
} else {
changedDistributionTests = sh(script:"python3 test/prob/getDependencies.py", returnStdout:true).trim().readLines()
}
}
}
}
stage ('Distribution tests') {
when {
allOf {
expression {
!skipRemainingStages
}
expression {
!changedDistributionTests.isEmpty()
}
}
}
agent { label 'linux && docker' }
steps {
script {
def tests = [:]
for (f
559E
in changedDistributionTests.collate(24)) {
def names = f.join(" ")
tests["Distribution Tests: ${names}"] = { node ("linux && docker && 8core") {
deleteDir()
docker.image('stanorg/ci:gpu-cpp17').inside {
catchError {
unstash 'MathSetup'
sh """
echo CXX=${CLANG_CXX} > make/local
echo O=0 >> make/local
echo N_TESTS=${N_TESTS} >> make/local
"""
script {
if (params.withRowVector || isBranch('develop') || isBranch('master')) {
sh "echo CXXFLAGS+=-DSTAN_TEST_ROW_VECTORS >> make/local"
sh "echo CXXFLAGS+=-DSTAN_PROB_TEST_ALL >> make/local"
}
}
sh "cat make/local"
sh "./runTests.py -j${PARALLEL} ${names}"
}
deleteDir()
}
} }
}
tests.failFast = true
parallel tests
}
}
post {
always {
retry(3) { deleteDir() }
}
}
}
stage('Upstream tests') {
agent { label 'linux' }
when {
allOf {
expression {
env.BRANCH_NAME ==~ /PR-\d+/
}
expression {
!skipRemainingStages
}
}
}
steps {
build(job: "Stan/Stan/${stan_pr()}",
parameters: [string(name: 'math_pr', value: env.BRANCH_NAME),
string(name: 'cmdstan_pr', value: cmdstan_pr())])
}
}
stage('Upload doxygen') {
agent {
docker {
image 'stanorg/ci:gpu-cpp17'
label 'linux'
}
}
when { branch 'develop'}
steps {
retry(3) { checkout scm }
withCredentials([usernamePassword(credentialsId: 'a630aebc-6861-4e69-b497-fd7f496ec46b',
usernameVariable: 'GIT_USERNAME', passwordVariable: 'GIT_PASSWORD')]) {
sh """#!/bin/bash
set -x
make doxygen
git config user.email "mc.stanislaw@gmail.com"
git config user.name "Stan Jenkins"
git checkout --detach
git branch -D gh-pages
git push https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/stan-dev/math.git :gh-pages
git checkout --orphan gh-pages
git add -f doc
git commit --author='Stan BuildBot <mc.stanislaw@gmail.com>' -m "auto generated docs from Jenkins"
git subtree push --prefix doc/api/html https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/stan-dev/math.git gh-pages
"""
}
}
post { always { deleteDir() } }
}
}
post {
always {
node("linux") {
recordIssues(
enabledForFailure: false,
tool: clang()
)
}
}
success {
script {
utils.updateUpstream(env, 'stan')
utils.mailBuildResults("SUCCESSFUL")
}
}
unstable { script { utils.mailBuildResults("UNSTABLE", alsoNotify()) } }
failure { script { utils.mailBuildResults("FAILURE", alsoNotify()) } }
}
}