Closed
Description
Describe the bug
This may be a duplicate of 29754.
Having merged from upstream, the imports in sklearn/metrics/pairwise.py do not compile.
I am getting error:
"sklearn/metrics/_dist_metrics.pyx", line 1, in init sklearn.metrics._dist_metrics"
I have tried rebuilding my conda environment and sklearn.
Steps/Code to Reproduce
$ python -m sklearn.kernel_approximation
Expected Results
not an error
Actual Results
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "/Users/conradstevens/scikit-learn/sklearn/kernel_approximation.py", line 20, in <module>
from .metrics.pairwise import KERNEL_PARAMS, PAIRWISE_KERNEL_FUNCTIONS, pairwise_kernels
File "/Users/conradstevens/scikit-learn/sklearn/metrics/__init__.py", line 6, in <module>
from . import cluster
File "/Users/conradstevens/scikit-learn/sklearn/metrics/cluster/__init__.py", line 28, in <module>
from ._unsupervised import (
File "/Users/conradstevens/scikit-learn/sklearn/metrics/cluster/_unsupervised.py", line 21, in <module>
from ..pairwise import _VALID_METRICS, pairwise_distances, pairwise_distances_chunked
File "/Users/conradstevens/scikit-learn/sklearn/metrics/pairwise.py", line 46, in <module>
from ._pairwise_distances_reduction import ArgKmin
File "/Users/conradstevens/scikit-learn/sklearn/metrics/_pairwise_distances_reduction/__init__.py", line 97, in <module>
from ._dispatcher import (
File "/Users/conradstevens/scikit-learn/sklearn/metrics/_pairwise_distances_reduction/_dispatcher.py", line 11, in <module>
from .._dist_metrics import (
File "sklearn/metrics/_dist_metrics.pyx", line 1, in init sklearn.metrics._dist_metrics
ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObjectVersions
$ python -c "import sklearn; sklearn.show_versions()"
System:
python: 3.12.5 | packaged by conda-forge | (main, Aug 8 2024, 18:31:54) [Clang 16.0.6 ]
executable: /opt/homebrew/Caskroom/miniconda/base/envs/sklearn-dev-3/bin/python
machine: macOS-14.4.1-x86_64-i386-64bit
Python dependencies:
sklearn: 1.6.dev0
pip: 24.2
setuptools: 72.2.0
numpy: 2.1.0
scipy: 1.14.1
Cython: 3.0.11
pandas: None
matplotlib: None
joblib: 1.4.2
threadpoolctl: 3.5.0
Built with OpenMP: True
threadpoolctl info:
user_api: blas
internal_api: openblas
num_threads: 10
prefix: libopenblas
filepath: /opt/homebrew/Caskroom/miniconda/base/envs/sklearn-dev-3/lib/libopenblasp-r0.3.27.dylib
version: 0.3.27
threading_layer: openmp
architecture: Nehalem
user_api: openmp
internal_api: openmp
num_threads: 10
prefix: libomp
filepath: /opt/homebrew/Caskroom/miniconda/base/envs/sklearn-dev-3/lib/libomp.dylib
version: None