Why do I get the error "ModuleNotFoundError: No module named 'setuptools'" when using `asv run`? #29494

AoligeiY · 2024-07-15T14:12:02Z

AoligeiY
Jul 15, 2024

I am now benchmarking in the asv_benchmarks directory, I am benchmarking in the asv_benchmarks directory, and I am running the command asv run -b linear_model HEAD^! but it gives me the following error, what should I do?

It mentions that I don't have setuptools installed, but I do have them in my environment and in asv_conf.json I have added setuptools.

Couldn't load asv.plugins._mamba_helpers because
No module named 'libmambapy'
· Fetching recent changes.
· Creating environments................
· Discovering benchmarks
·· Uninstalling from virtualenv-py3.11-cython3.0.10-joblib1.3.2-numpy1.25.2-pandas2.1.0-scipy1.11.2-setuptools65.5.0-setuptools_scm[toml]8.1.0-setuptools_scm_git_archive1.4.1-threadpoolctl3.2.0.
·· Building d79cb58c <main> for virtualenv-py3.11-cython3.0.10-joblib1.3.2-numpy1.25.2-pandas2.1.0-scipy1.11.2-setuptools65.5.0-setuptools_scm[toml]8.1.0-setuptools_scm_git_archive1.4.1-threadpoolctl3.2.0.
·· Error running /home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/bin/python -m build (exit status 1)
   STDOUT -------->
   * Creating isolated environment: venv+pip...
   * Installing packages in isolated environment:
     - Cython>=3.0.10
     - meson-python>=0.16.0
     - numpy>=2
     - scipy>=1.6.0
   > /home/yangchangke/scikit-
     learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/bin/python -m pip
     --python /tmp/build-env-n9s9u8tp/bin/python install --use-pep517 --no-warn-
     script-location --no-compile -r /tmp/build-reqs-avtcsl16.txt
   < Collecting scipy>=1.6.0 (from -r /tmp/build-reqs-avtcsl16.txt (line 1))
   <   Using cached scipy-1.14.0-cp311-cp311-
     manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (60 kB)
   < Collecting Cython>=3.0.10 (from -r /tmp/build-reqs-avtcsl16.txt (line 2))
   <   Using cached Cython-3.0.10-cp311-cp311-
     manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (3.2 kB)
   < Collecting numpy>=2 (from -r /tmp/build-reqs-avtcsl16.txt (line 3))
   <   Using cached numpy-2.0.0-cp311-cp311-
     manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (62 kB)
   < Collecting meson-python>=0.16.0 (from -r /tmp/build-reqs-avtcsl16.txt (line
     4))
   <   Using cached meson_python-0.16.0-py3-none-any.whl.metadata (4.1 kB)
   < Collecting meson>=0.63.3 (from meson-python>=0.16.0->-r /tmp/build-reqs-
     avtcsl16.txt (line 4))
   <   Using cached meson-1.5.0.tar.gz (2.3 MB)
   <   Preparing metadata (pyproject.toml): started
   <   Preparing metadata (pyproject.toml): finished with status 'done'

   Traceback (most recent call last):
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/__main__.py", line 178, in _handle_build_error
       yield
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/__main__.py", line 429, in main
       built = build_call(
               ^^^^^^^^^^^
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/__main__.py", line 268, in build_package_via_sdist
       sdist = _build(isolation, srcdir, outdir, 'sdist', config_settings, skip_dependency_check, installer)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/__main__.py", line 170, in _build
       return _build_in_isolated_env(srcdir, outdir, distribution, config_settings, installer)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/__main__.py", line 135, in _build_in_isolated_env
       env.install(builder.build_system_requires)
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/env.py", line 136, in install
       self._env_backend.install_requirements(requirements)
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/env.py", line 265, in install_requirements
       run_subprocess(cmd)
     File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/lib/python3.11/site-packages/build/_ctx.py", line 71, in run_subprocess
       subprocess.run(cmd, capture_output=True, check=True, env=env)
     File "/usr/local/python-3.11.6/lib/python3.11/subprocess.py", line 571, in run
       raise CalledProcessError(retcode, process.args,
   subprocess.CalledProcessError: Command '['/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/bin/python', '-m', 'pip', '--python', '/tmp/build-env-n9s9u8tp/bin/python', 'install', '--use-pep517', '--no-warn-script-location', '--no-compile', '-r', '/tmp/build-reqs-avtcsl16.txt']' returned non-zero exit status 2.

   ERROR Command '['/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b0025c983e0a4477f/bin/python', '-m', 'pip', '--python', '/tmp/build-env-n9s9u8tp/bin/python', 'install', '--use-pep517', '--no-warn-script-location', '--no-compile', '-r', '/tmp/build-reqs-avtcsl16.txt']' returned non-zero exit status 2.
   STDERR -------->
   < ERROR: Exception:
   < Traceback (most recent call last):
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/cli/base_command.py", line 179, in
     exc_logging_wrapper
   <     status = run_func(*args)
   <              ^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/cli/req_command.py", line 67, in wrapper
   <     return func(self, options, args)
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/commands/install.py", line 377, in run
   <     requirement_set = resolver.resolve(
   <                       ^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in
     resolve
   <     result = self._result = resolver.resolve(
   <                             ^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
   <     state = resolution.resolve(requirements, max_rounds=max_rounds)
   <             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/resolvelib/resolvers.py", line 427, in resolve
   <     failure_causes = self._attempt_to_pin_criterion(name)
   <                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/resolvelib/resolvers.py", line 239, in
     _attempt_to_pin_criterion
   <     criteria = self._get_updated_criteria(candidate)
   <                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/resolvelib/resolvers.py", line 230, in
     _get_updated_criteria
   <     self._add_to_criteria(criteria, requirement, parent=candidate)
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
   <     if not criterion.candidates:
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
   <     return bool(self._sequence)
   <            ^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 174,
     in __bool__
   <     return any(self)
   <            ^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 162,
     in <genexpr>
   <     return (c for c in iterator if id(c) not in self._incompatible_ids)
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 53,
     in _iter_built
   <     candidate = func()
   <                 ^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/factory.py", line 185, in
     _make_candidate_from_link
   <     base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
   <                                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/factory.py", line 231, in
     _make_base_candidate_from_link
   <     self._link_candidate_cache[link] = LinkCandidate(
   <                                        ^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/candidates.py", line 303, in
     __init__
   <     super().__init__(
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/candidates.py", line 158, in
     __init__
   <     self.dist = self._prepare()
   <                 ^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/candidates.py", line 235, in
     _prepare
   <     dist = self._prepare_distribution()
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/resolution/resolvelib/candidates.py", line 314, in
     _prepare_distribution
   <     return preparer.prepare_linked_requirement(self._ireq,
     parallel_builds=True)
   < ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/operations/prepare.py", line 527, in
     prepare_linked_requirement
   <     return self._prepare_linked_requirement(req, parallel_builds)
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/operations/prepare.py", line 642, in
     _prepare_linked_requirement
   <     dist = _get_prepared_distribution(
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/operations/prepare.py", line 72, in
     _get_prepared_distribution
   <     abstract_dist.prepare_distribution_metadata(
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/distributions/sdist.py", line 69, in
     prepare_distribution_metadata
   <     self.req.prepare_metadata()
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/req/req_install.py", line 574, in prepare_metadata
   <     self.metadata_directory = generate_metadata(
   <                               ^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_internal/operations/build/metadata.py", line 35, in
     generate_metadata
   <     distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir)
   <                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-packages/pip/_internal/utils/misc.py",
     line 730, in prepare_metadata_for_build_wheel
   <     return super().prepare_metadata_for_build_wheel(
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/pyproject_hooks/_impl.py", line 186, in
     prepare_metadata_for_build_wheel
   <     return self._call_hook('prepare_metadata_for_build_wheel', {
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/pyproject_hooks/_impl.py", line 321, in _call_hook
   <     raise BackendUnavailable(data.get('traceback', ''))
   < pip._vendor.pyproject_hooks._impl.BackendUnavailable: Traceback (most recent
     call last):
   <   File "/home/yangchangke/scikit-learn/asv_benchmarks/env/a4af63ca4e6d797b00
     25c983e0a4477f/lib/python3.11/site-
     packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77,
     in _build_backend
   <     obj = import_module(mod_path)
   <           ^^^^^^^^^^^^^^^^^^^^^^^
   <   File "/usr/local/python-3.11.6/lib/python3.11/importlib/__init__.py", line
     126, in import_module
   <     return _bootstrap._gcd_import(name[level:], package, level)
   <            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   <   File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
   <   File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
   <   File "<frozen importlib._bootstrap>", line 1126, in
     _find_and_load_unlocked
   <   File "<frozen importlib._bootstrap>", line 241, in
     _call_with_frames_removed
   <   File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
   <   File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
   <   File "<frozen importlib._bootstrap>", line 1140, in
     _find_and_load_unlocked
   < ModuleNotFoundError: No module named 'setuptools'


·· Failed to build the project and import the benchmark suite.

Answered by jeremiedbb

Jul 16, 2024

I opened #29500 to fix it.

View full answer

adrinjalali · 2024-07-16T08:31:32Z

adrinjalali
Jul 16, 2024
Maintainer

Interesting!

cc @lesteve @jeremiedbb

2 replies

jeremiedbb Jul 16, 2024
Maintainer

I opened #29500 to fix it.

Answer selected by lesteve

AoligeiY Jul 17, 2024
Author

Thanks mate, it's up and running. Big help.

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Why do I get the error "ModuleNotFoundError: No module named 'setuptools'" when using asv run? #29494

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adrinjalali Jul 16, 2024 Maintainer

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jeremiedbb Jul 16, 2024 Maintainer

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AoligeiY Jul 17, 2024 Author

Why do I get the error "ModuleNotFoundError: No module named 'setuptools'" when using `asv run`? #29494

AoligeiY
Jul 15, 2024

Replies: 1 comment 2 replies

adrinjalali
Jul 16, 2024
Maintainer

jeremiedbb Jul 16, 2024
Maintainer

AoligeiY Jul 17, 2024
Author