Description
Description
When i execute the command sudo pip3 install -U scikit-image in the Ubuntu operating system 18.04, and then i give me this error:
Collecting scikit-image
Downloading https://files.pythonhosted.org/packages/aa/d1/e852fe5129db2b57bf2a3c946cc8a4b67da4edfa753453ecd523c4e30ecc/scikit_image-0.17.1-cp36-cp36m-manylinux1_x86_64.whl (12.3MB)
100% |████████████████████████████████| 12.3MB 98kB/s
Requirement already up-to-date: pillow!=7.1.0,!=7.1.1,>=4.3.0 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Requirement already up-to-date: numpy>=1.15.1 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Requirement already up-to-date: pooch>=0.5.2 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Requirement already up-to-date: PyWavelets>=1.1.1 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Requirement already up-to-date: matplotlib!=3.0.0,>=2.0.0 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Requirement already up-to-date: networkx>=2.0 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Requirement already up-to-date: scipy>=1.0.1 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Collecting tifffile>=2019.7.26 (from scikit-image)
Downloading https://files.pythonhosted.org/packages/36/32/de9302699721557ba79aa9889543d34ce45713d8b174d8abbe9dc570d3b8/tifffile-2020.5.7-py3-none-any.whl (136kB)
100% |████████████████████████████████| 143kB 7.0MB/s
Requirement already up-to-date: imageio>=2.3.0 in /usr/local/lib/python3.6/dist-packages (from scikit-image)
Requirement already up-to-date: requests in /usr/local/lib/python3.6/dist-packages (from pooch>=0.5.2->scikit-image)
Requirement already up-to-date: appdirs in /usr/local/lib/python3.6/dist-packages (from pooch>=0.5.2->scikit-image)
Requirement already up-to-date: packaging in /usr/local/lib/python3.6/dist-packages (from pooch>=0.5.2->scikit-image)
Requirement already up-to-date: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib!=3.0.0,>=2.0.0->scikit-image)
Requirement already up-to-date: python-dateutil>=2.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib!=3.0.0,>=2.0.0->scikit-image)
Requirement already up-to-date: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib!=3.0.0,>=2.0.0->scikit-image)
Requirement already up-to-date: cycler>=0.10 in /usr/local/lib/python3.6/dist-packages (from matplotlib!=3.0.0,>=2.0.0->scikit-image)
Requirement already up-to-date: decorator>=4.3.0 in /usr/local/lib/python3.6/dist-packages (from networkx>=2.0->scikit-image)
Collecting imagecodecs>=2020.2.18 (from tifffile>=2019.7.26->scikit-image)
Downloading https://files.pythonhosted.org/packages/75/95/3699360d15e5e5d450bbd16ea554fb185117947e76fc772078c4f59ae1c1/imagecodecs-2020.2.18.tar.gz (8.8MB)
100% |████████████████████████████████| 8.8MB 134kB/s
Requirement already up-to-date: chardet<4,>=3.0.2 in /usr/lib/python3/dist-packages (from requests->pooch>=0.5.2->scikit-image)
Requirement already up-to-date: idna<3,>=2.5 in /usr/local/lib/python3.6/dist-packages (from requests->pooch>=0.5.2->scikit-image)
Requirement already up-to-date: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /usr/local/lib/python3.6/dist-packages (from requests->pooch>=0.5.2->scikit-image)
Requirement already up-to-date: certifi>=2017.4.17 in /usr/local/lib/python3.6/dist-packages (from requests->pooch>=0.5.2->scikit-image)
Requirement already up-to-date: six in /usr/local/lib/python3.6/dist-packages (from packaging->pooch>=0.5.2->scikit-image)
Installing collected packages: imagecodecs, tifffile, scikit-image
Running setup.py install for imagecodecs ... error
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-wgttk112/imagecodecs/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-2706oono-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/imagecodecs
copying imagecodecs/imagecodecs.py -> build/lib.linux-x86_64-3.6/imagecodecs
copying imagecodecs/_imagecodecs.py -> build/lib.linux-x86_64-3.6/imagecodecs
copying imagecodecs/__init__.py -> build/lib.linux-x86_64-3.6/imagecodecs
copying imagecodecs/__main__.py -> build/lib.linux-x86_64-3.6/imagecodecs
creating build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-liblzma -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-giflib -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-jpeg -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-libjpeg-turbo -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-zlib -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-charls -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-brunsli -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-libtiff -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-zopfli -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-libaec -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-lz4 -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-libwebp -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-fastlz -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/
57A6
LICENSE-lcms2 -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-jxrlib -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-openjpeg -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-jpg_0xc3 -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-bitshuffle -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-libmng -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-zfp -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-libpng -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-snappy -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-bzip2 -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-brotli -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-zstd -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-blosc -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
copying imagecodecs/licenses/LICENSE-lzf -> build/lib.linux-x86_64-3.6/imagecodecs/licenses
running build_ext
skipping 'imagecodecs/_aec.c' Cython extension (up-to-date)
skipping 'imagecodecs/_bitshuffle.c' Cython extension (up-to-date)
skipping 'imagecodecs/_blosc.c' Cython extension (up-to-date)
skipping 'imagecodecs/_brotli.c' Cython extension (up-to-date)
skipping 'imagecodecs/_bz2.c' Cython extension (up-to-date)
skipping 'imagecodecs/_gif.c' Cython extension (up-to-date)
skipping 'imagecodecs/_imcd.c' Cython extension (up-to-date)
skipping 'imagecodecs/_jpeg2k.c' Cython extension (up-to-date)
skipping 'imagecodecs/_jpeg8.c' Cython extension (up-to-date)
skipping 'imagecodecs/_jpegsof3.c' Cython extension (up-to-date)
skipping 'imagecodecs/_jpegxr.c' Cython extension (up-to-date)
skipping 'imagecodecs/_lz4.c' Cython extension (up-to-date)
skipping 'imagecodecs/_lzf.c' Cython extension (up-to-date)
skipping 'imagecodecs/_lzma.c' Cython extension (up-to-date)
skipping 'imagecodecs/_png.c' Cython extension (up-to-date)
skipping 'imagecodecs/_shared.c' Cython extension (up-to-date)
skipping 'imagecodecs/_snappy.c' Cython extension (up-to-date)
skipping 'imagecodecs/_tiff.c' Cython extension (up-to-date)
skipping 'imagecodecs/_webp.c' Cython extension (up-to-date)
skipping 'imagecodecs/_zlib.c' Cython extension (up-to-date)
skipping 'imagecodecs/_zopfli.c' Cython extension (up-to-date)
skipping 'imagecodecs/_zstd.c' Cython extension (up-to-date)
building 'imagecodecs._aec' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/imagecodecs
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iimagecodecs -I/usr/include/python3.6m -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -c imagecodecs/_aec.c -o build/temp.linux-x86_64-3.6/imagecodecs/_aec.o
In file included from /usr/include/python3.6m/numpy/ndarraytypes.h:1809:0,
from /usr/include/python3.6m/numpy/ndarrayobject.h:18,
from /usr/include/python3.6m/numpy/arrayobject.h:4,
from imagecodecs/_aec.c:598:
/usr/include/python3.6m/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
imagecodecs/_aec.c:602:10: fatal error: libaec.h: No such file or directory
#include "libaec.h"
^~~~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-wgttk112/imagecodecs/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-2706oono-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-wgttk112/imagecodecs/I downloaded all the dependencies but i don't work. Any suggestion? I already followed this page https://scikit-image.org/docs/stable/install.html
Way to reproduce
sudo pip3 install -U scikit-image Version information
Ubuntu 18.04
Ptyhon: 3.6# your output here