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I recently updated my R installation to R 4.4.1, and resetup all my packages, then went to do setup for a workshop that wanted me to install Azimuth. I got the installation to work, but then on loading, got a warning
> library(Azimuth)
Registered S3 method overwritten by 'SeuratDisk':
method from
as.sparse.H5Group Seurat
No methods found in package 'Biostrings' for request: 'compareStrings' when loading 'CNEr'
Attaching shinyBS
Further investigation showed that compareStrings is no longer part of Biostrings:
> Biostrings::compareStrings()
Error: unable to find an inherited method for function 'compareStrings' for signature 'pattern = "missing", subject = "missing"'
In addition: Warning message:
In .call_fun_in_pwalign("compareStrings", ...) :
compareStrings() has moved to the
pwalign package. Please call
pwalign::compareStrings() to get rid
of this warning.
The function still seems to work as expected, it just pops up a warning every time it is run.
The text was updated successfully, but these errors were encountered:
I recently updated my R installation to R 4.4.1, and resetup all my packages, then went to do setup for a workshop that wanted me to install Azimuth. I got the installation to work, but then on loading, got a warning
Further investigation showed that
compareStringsis no longer part ofBiostrings:The function still seems to work as expected, it just pops up a warning every time it is run.
The text was updated successfully, but these errors were encountered: