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lines changed Original file line number Diff line number Diff line change @@ -42,9 +42,13 @@ cdef class AlignedSegment:
4242
4343 # caching of array properties for quick access
4444 cdef object cache_query_qualities
45+ cdef object cache_query_qualities_str
4546 cdef object cache_query_alignment_qualities
47+ cdef object cache_query_alignment_qualities_str
48+ cdef void _clear_cached_query_qualities(self )
4649 cdef object cache_query_sequence
4750 cdef object cache_query_alignment_sequence
51+ cdef void _clear_cached_query_sequences(self )
4852
4953 # add an alignment tag with value to the AlignedSegment
5054 # an existing tag of the same name will be replaced.
Original file line number Diff line number Diff line change @@ -83,6 +83,7 @@ class AlignedSegment:
8383 template_length : int
8484 query_sequence : Optional [str ]
8585 query_qualities : Optional [array ]
86+ query_qualities_str : Optional [str ]
8687 bin : int
8788 is_paired : bool
8889 is_proper_pair : bool
@@ -121,6 +122,8 @@ class AlignedSegment:
121122 @property
122123 def query_alignment_qualities (self ) -> Optional [array ]: ...
123124 @property
125+ def query_alignment_qualities_str (self ) -> Optional [str ]: ...
126+ @property
124127 def query_alignment_start (self ) -> int : ...
125128 @property
126129 def query_alignment_end (self ) -> int : ...
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