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For EstimateModel brick (spm), when factor_info parameter is used in Level1design brick, T and F contrasts (ess*, con*, spmF* and spmT* images) are created automatically by SPM.
As those outputs are not defined in Nipype, Capsule/populse do not copy those outputs from the temporary folder to the final output directory.
An issue and a PR have been done in Nipype but not merged yet (it works with those modifications done in local).
If the modifications in Nipype are not merged, maybe it will be useful to better understand why Capsul/Populse do not copy these images.