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lines changed Original file line number Diff line number Diff line change 44 push : {branches: [main, master]}
55 pull_request : {branches: [main, master]}
66
7+ defaults :
8+ run :
9+ shell : bash -l {0}
10+
711jobs :
812 build :
913 runs-on : ubuntu-latest
10- strategy :
11- matrix :
12- python : [3.9]
1314 steps :
1415 - uses : actions/checkout@v3
1516 - name : Disable etelemetry
@@ -18,12 +19,12 @@ jobs:
1819 uses : conda-incubator/setup-miniconda@v2
1920 with :
2021 activate-environment : pydra-tutorial
21- environment-file : etc/ environment.yml
22- python-version : ${{ matrix.python-version }}
23- auto-activate-base : false
24- run : conda activate pydra-tutorial
22+ environment-file : environment.yml
23+ - run : conda info
24+ - run : conda list
25+ - run : conda config --show
2526 - name : Install dependencies
26- run : conda install -c conda-forge jupyter-book
27+ run : pip install jupyter-book
2728 - name : Build JupyterBook
2829 run : jb build -W jupyterbook
2930 - uses : peaceiris/actions-gh-pages@v3
Original file line number Diff line number Diff line change @@ -4,7 +4,7 @@ on: [push, pull_request]
44
55defaults :
66 run :
7- shell : bash
7+ shell : bash -l {0}
88
99jobs :
1010 build :
@@ -16,17 +16,18 @@ jobs:
1616 runs-on : ${{ matrix.os }}
1717
1818 steps :
19- - uses : actions/checkout@v2
19+ - uses : actions/checkout@v3
2020 - name : Disable etelemetry
21- run : echo "NO_ET=TRUE" >> $GITHUB_ENV
22- - name : Set up Python ${{ matrix.python-version }}
23- - uses : conda-incubator/setup-miniconda@v2
21+ run : echo "NO_ET=TRUE" >> $GITHUB_ENV
22+ - name : Active conda env pydra-tutorial
23+ uses : conda-incubator/setup-miniconda@v2
2424 with :
2525 activate-environment : pydra-tutorial
26- environment-file : etc/ environment.yml
26+ environment-file : environment.yml
2727 python-version : ${{ matrix.python-version }}
28- auto-activate-base : false
29- run : conda activate pydra-tutorial
28+ - run : conda info
29+ - run : conda list
30+ - run : conda config --show
3031 - name : Convert all md files to ipynb
3132 run : jupytext notebooks/*.md --to ipynb
3233 - name : Test notebooks with pytest
Original file line number Diff line number Diff line change @@ -3,14 +3,16 @@ channels:
33 - conda-forge
44 - defaults
55dependencies :
6- - datalad
76 - git-annex
7+ - pip
88 - pip :
9+ - datalad
910 - pydra
1011 - jupyter
1112 - jupyter_contrib_nbextensions
1213 - jupytext
1314 - jupyterlab
15+ - matplotlib
1416 - nbformat
1517 - nbval
1618 - nest_asyncio
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