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Assets

Atomic weight/mass and isotopic compositions (atomicweights.yaml)

Atomic Weights and Isotopic Compositions with Relative Atomic Masses

https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses

Parameters for LogP prediction (wclogp.yaml)

  1. Wildman, S. A. and Crippen, G. M. (1999). Prediction of Physicochemical Parameters by Atomic Contributions. Journal of Chemical Information and Modeling, 39(5), 868–873. https://doi.o 3B3D rg/10.1021/ci990307l

Structural alert datasets from ChEMBL database

ChEMBL
https://www.ebi.ac.uk/chembl/

Version: 29

The data in ChEMBL is covered by the licence in the file LICENSE.

Under the -BY clause, we request attribution for subsequent use of ChEMBL.

For publications using ChEMBL data, the primary current citation is:

Mendez D, Gaulton A, Bento AP, Chambers J, De Veij M, Félix E, Magariños MP, Mosquera JF, Mutowo P, Nowotka M, Gordillo-Marañón M, Hunter F, Junco L, Mugumbate G, Rodriguez-Lopez M, Atkinson F, Bosc N, Radoux CJ, Segura-Cabrera A, Hersey A, Leach AR. ChEMBL: towards direct deposition of bioassay data. Nucleic Acids Res. 2019 47(D1):D930-D940. DOI: 10.1093/nar/gky1075

If ChEMBL is incorporated into other works, we ask that the ChEMBL IDs are preserved, and that the release number of ChEMBL is clearly displayed.

Sources of structure data files for testing

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