8000 bioawk -c fastx sets OFS=\\t with no way to change it. · Issue #33 · lh3/bioawk · GitHub
[go: up one dir, main page]

Skip to content

bioawk -c fastx sets OFS=\\t with no way to change it. #33

@hwalinga

Description

@hwalinga

Hello,

When using bioawk with the -c fastx option the OFS parameter is set to a tab (\t) with no way to change it.

Reproduced by building from source.

Test:

bioawk -c fastx -v OFS=" " '{print OFS}' some.fasta | head -1 | od -bc

Will output:

0000000 011 012
         \t  \n
0000002

Note: some.fasta can be anything (if at least it is a fasta file), but not providing any file will not trigger this.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions

      0