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from sklearn .ensemble import GradientBoostingClassifier
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from sklearn .ensemble import GradientBoostingRegressor
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from sklearn .ensemble ._gradient_boosting import predict_stages
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- from sklearn .preprocessing import OneHotEncoder
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+ from sklearn .preprocessing import OneHotEncoder , scale
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from sklearn .svm import LinearSVC
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from sklearn .metrics import mean_squared_error
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from sklearn .model_selection import train_test_split
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T = [[- 1 , - 1 ], [2 , 2 ], [3 , 2 ]]
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true_result = [- 1 , 1 , 1 ]
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- rng = np .random .RandomState (0 )
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- # also load the boston dataset
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- # and randomly permute it
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- boston = datasets .load_boston ()
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- perm = rng .permutation (boston .target .size )
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- boston .data = boston .data [perm ]
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- boston .target = boston .target [perm ]
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+ # also make regression dataset
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+ X_reg , y_reg = make_regression (
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+ n_samples = 500 , n_features = 10 , n_informative = 8 , noise = 10 , random_state = 7
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+ )
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+ y_reg = scale (y_reg )
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+ rng = np .random .RandomState (0 )
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# also load the iris dataset
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# and randomly permute it
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iris = datasets .load_iris ()
@@ -211,39 +210,44 @@ def test_classification_synthetic(loss):
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check_classification_synthetic (loss )
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- def check_boston (loss , subsample ):
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- # Check consistency on dataset boston house prices with least squares
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+ def check_regression_dataset (loss , subsample ):
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+ # Check consistency on regression dataset with least squares
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# and least absolute deviation.
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- ones = np .ones (len (boston . target ))
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+ ones = np .ones (len (y_reg ))
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last_y_pred = None
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- for sample_weight in None , ones , 2 * ones :
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- clf = GradientBoostingRegressor (n_estimators = 100 ,
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+ for sample_weight in [ None , ones , 2 * ones ] :
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+ reg = GradientBoostingRegressor (n_estimators = 100 ,
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loss = loss ,
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max_depth = 4 ,
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subsample = subsample ,
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min_samples_split = 2 ,
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random_state = 1 )
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- assert_raises (ValueError , clf .predict , boston .data )
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- clf .fit (boston .data , boston .target ,
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- sample_weight = sample_weight )
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- leaves = clf .apply (boston .data )
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- assert leaves .shape == (506 , 100 )
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+ reg .fit (X_reg , y_reg , sample_weight = sample_weight )
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+ leaves = reg .apply (X_reg )
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+ assert leaves .shape == (500 , 100 )
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- y_pred = clf .predict (boston . data )
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- mse = mean_squared_error (boston . target , y_pred )
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- assert mse < 6.0
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+ y_pred = reg .predict (X_reg )
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+ mse = mean_squared_error (y_reg , y_pred )
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+ assert mse < 0.04
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if last_y_pred is not None :
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- assert_array_almost_equal (last_y_pred , y_pred )
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+ # FIXME: We temporarily bypass this test. This is due to the fact
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+ # that GBRT with and without `sample_weight` do not use the same
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+ # implementation of the median during the initialization with the
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+ # `DummyRegressor`. In the future, we should make sure that both
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+ # implementations should be the same. See PR #17377 for more.
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+ # assert_allclose(last_y_pred, y_pred)
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+ pass
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last_y_pred = y_pred
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+ @pytest .mark .network
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@pytest .mark .parametrize ('loss' , ('ls' , 'lad' , 'huber' ))
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@pytest .mark .parametrize ('subsample' , (1.0 , 0.5 ))
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- def test_boston (loss , subsample ):
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- check_boston (loss , subsample )
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+ def test_regression_dataset (loss , subsample ):
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+ check_regression_dataset (loss , subsample )
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def check_iris (subsample , sample_weight ):
@@ -310,8 +314,8 @@ def test_regression_synthetic():
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def test_feature_importances ():
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- X = np .array (boston . data , dtype = np .float32 )
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- y = np .array (boston . target , dtype = np .float32 )
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+ X = np .array (X_reg , dtype = np .float32 )
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+ y = np .array (y_reg , dtype = np .float32 )
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clf = GradientBoostingRegressor (n_estimators = 100 , max_depth = 5 ,
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min_samples_split = 2 , random_state = 1 )
@@ -598,14 +602,14 @@ def test_quantile_loss():
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max_depth = 4 , alpha = 0.5 ,
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random_state = 7 )
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- clf_quantile .fit (boston . data , boston . target )
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- y_quantile = clf_quantile .predict (boston . data )
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+ clf_quantile .fit (X_reg , y_reg )
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+ y_quantile = clf_quantile .predict (X_reg )
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clf_lad = GradientBoostingRegressor (n_estimators = 100 , loss = 'lad' ,
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max_depth = 4 , random_state = 7 )
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- clf_lad .fit (boston . data , boston . target )
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- y_lad = clf_lad .predict (boston . data )
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+ clf_lad .fit (X_reg , y_reg )
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+ y_lad = clf_lad .predict (X_reg )
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assert_array_almost_equal (y_quantile , y_lad , decimal = 4 )
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@@ -1012,7 +1016,7 @@ def test_complete_regression():
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est = GradientBoostingRegressor (n_estimators = 20 , max_depth = None ,
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random_state = 1 , max_leaf_nodes = k + 1 )
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- est .fit (boston . data , boston . target )
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+ est .fit (X_reg , y_reg )
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tree = est .estimators_ [- 1 , 0 ].tree_
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assert (tree .children_left [tree .children_left == TREE_LEAF ].shape [0 ] ==
@@ -1024,14 +1028,14 @@ def test_zero_estimator_reg():
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est = GradientBoostingRegressor (n_estimators = 20 , max_depth = 1 ,
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random_state = 1 , init = 'zero' )
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- est .fit (boston . data , boston . target )
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- y_pred = est .predict (boston . data )
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- mse = mean_squared_error (boston . target , y_pred )
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- assert_almost_equal (mse , 33.0 , decimal = 0 )
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+ est .fit (X_reg , y_reg )
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+ y_pred = est .predict (X_reg )
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+ mse = mean_squared_error (y_reg , y_pred )
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+ assert_almost_equal (mse , 0.52 , decimal = 2 )
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est = GradientBoostingRegressor (n_estimators = 20 , max_depth = 1 ,
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random_state = 1 , init = 'foobar' )
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- assert_raises (ValueError , est .fit , boston . data , boston . target )
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+ assert_raises (ValueError , est .fit , X_reg , y_reg )
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def test_zero_estimator_clf ():
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