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DESCRIPTION
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Package: cvasi
Type: Package
Title: Calibration, Validation, and Simulation of TKTD Models
Version: 1.3.1
Authors@R: c(
person("Nils", "Kehrein", email="nils.kehrein@gmail.com", role=c("aut", "cre")),
person("Dirk", "Nickisch", role="aut"),
person("Peter", "Vermeiren", role="aut"),
person("Torben", "Wittwer", role="ctb"),
person("Johannes", "Witt", role="ctb"),
person("Andre", "Gergs", role="ctb")
)
Description: Eases the use of ecotoxicological effect models. Can simulate
common toxicokinetic-toxicodynamic (TK/TD) models such as
General Unified Threshold models of Survival (GUTS) and Lemna. It can
derive effects and effect profiles (EPx) from scenarios. It supports the
use of 'tidyr' workflows employing the pipe symbol. Time-consuming
tasks can be parallelized.
URL: https://github.com/cvasi-tktd/cvasi
BugReports: https://github.com/cvasi-tktd/cvasi/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports:
cli,
rlang,
stringr,
dplyr,
tibble,
purrr,
furrr,
tidyr,
magrittr,
utils,
stats,
methods,
grid,
gridExtra,
ggplot2,
GGally,
deSolve,
lubridate,
units,
lifecycle
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE, roclets = c("collate", "namespace", "rd",
"roxyglobals::global_roclet"))
Config/testthat/edition: 3
Collate:
'batch.R'
'cache_controls.R'
'class-CalibrationSet.R'
'class-ExposureSeries.R'
'class-EffectScenario.R'
'calibrate.R'
'class-ParameterSet.R'
'class-Transferable.R'
'data.R'
'dose_response.R'
'effect.R'
'epx.R'
'explore_space.R'
'fx.R'
'get.R'
'globals.R'
'has.R'
'import_morse.R'
'import_toxswa.R'
'is.R'
'lik_profile.R'
'log.R'
'man-deb.R'
'man-lemna.R'
'man-macrophytes.R'
'solver.R'
'model-algae.R'
'model-deb_abj.R'
'model-debtox.R'
'model-deb_daphnia.R'
'model-guts_red.R'
'model-lemna_setac.R'
'model-lemna_schmitt.R'
'model-myriophyllum.R'
'package.R'
'pll.R'
'plot.R'
'plotting.r'
'pull.R'
'sequence.R'
'set.R'
'set_bounds.R'
'set_exposure.R'
'set_forcings.R'
'set_init.R'
'set_param.R'
'set_transfer.R'
'set_window.R'
'show.R'
'simulate.R'
'survival.R'
'utils-pipe.R'
Suggests:
future,
knitr,
lemna,
rmarkdown,
roxyglobals,
testthat,
withr
Depends:
R (>= 3.5.0)
VignetteBuilder: knitr
Config/roxyglobals/filename: globals.R
Config/roxyglobals/unique: FALSE