Description
Coot 1.1.15 emits the following traceback on startup:
(MacCoot:19532): GLib-GIRepository-WARNING **: 13:22:51.096: Failed to load shared library 'libgobject-2.0.0.dylib' referenced by the typelib: dlopen(libgobject-2.0.0.dylib, 0x0009): tried: 'libgobject-2.0.0.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OSlibgobject-2.0.0.dylib' (no such file), '/usr/lib/libgobject-2.0.0.dylib' (no such file, not in dyld cache), 'libgobject-2.0.0.dylib' (no such file)
(MacCoot:19532): GLib-GIRepository-WARNING **: 13:22:51.098: Failed to load shared library 'libglib-2.0.0.dylib' referenced by the typelib: dlopen(libglib-2.0.0.dylib, 0x0009): tried: 'libglib-2.0.0.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OSlibglib-2.0.0.dylib' (no such file), '/usr/lib/libglib-2.0.0.dylib' (no such file, not in dyld cache), 'libglib-2.0.0.dylib' (no such file)
Traceback (most recent call last):
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/coot/coot_gui.py", line 39, in <module>
from gi.repository import Gtk, GObject
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 921, in _load_unlocked
File "<frozen importlib._bootstrap>", line 813, in module_from_spec
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/importer.py", line 146, in create_module
importlib.import_module('gi.repository.' + dep.split("-")[0])
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 921, in _load_unlocked
File "<frozen importlib._bootstrap>", line 813, in module_from_spec
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/importer.py", line 146, in create_module
importlib.import_module('gi.repository.' + dep.split("-")[0])
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 921, in _load_unlocked
File "<frozen importlib._bootstrap>", line 813, in module_from_spec
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/importer.py", line 146, in create_module
importlib.import_module('gi.repository.' + dep.split("-")[0])
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 921, in _load_unlocked
File "<frozen importlib._bootstrap>", line 813, in module_from_spec
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/importer.py", line 146, in create_module
importlib.import_module('gi.repository.' + dep.split("-")[0])
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 921, in _load_unlocked
File "<frozen importlib._bootstrap>", line 813, in module_from_spec
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/importer.py", line 147, in create_module
dynamic_module = load_overrides(introspection_module)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/overrides/__init__.py", line 98, in load_overrides
override_mod = importlib.import_module(override_package_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/overrides/GLib.py", line 37, in <module>
from gi import _option as option
File "/opt/homebrew/Cellar/python@3.12/3.12.10/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/gi/_option.py", line 41, in <module>
OPTION_CONTEXT_ERROR_QUARK = GLib.quark_to_string(GLib.option_error_quark())
^^^^^^^^^^^^^^^^^^^^^^^^^
gi._error.GError: gi-invoke-error-quark: Could not locate g_option_error_quark: dlopen(libglib-2.0.0.dylib, 0x0009): tried: 'libglib-2.0.0.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OSlibglib-2.0.0.dylib' (no such file), '/usr/lib/libglib-2.0.0.dylib' (no such file, not in dyld cache), 'libglib-2.0.0.dylib' (no such file) (1)
DEBUG:: in setup_python_with_coot_modules() PyImport_ImportModule() for gui_module: 0x0
This issue suggested GObject>=3.51 was the problem and indeed removing pygobject3 3.52.3 and reverting to pygobject3 3.50.0 removes this traceback. Probably need to version pygobject3@3.50.0 in brewsci/bio?