The BioJava - Core Module

A tutorial for the core module of BioJava.

About

The core module of BioJava provides an API that provides

Basic operations with biological sequences
Reading and Writing of popular sequence file formats
Translate DNA sequences into protein sequences

Index

This tutorial is split into several chapters.

Chapter 1 - Quick Installation

Chapter 2 - Basic Sequence types

Chapter 3 - Reading and Writing sequences

Chapter 4 - Translating DNA and protein sequences.

License

The content of this tutorial is available under the CC-BY license, available here.

Please Cite

BioJava 5: A community driven open-source bioinformatics library
Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W. Rose, Anthony Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael Heuer, Matt Larson, Stephen K. Burley, & Jose M. Duarte
PLOS Computational Biology (2019) 15 (2):e1006791.

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