Commits · bioinformatics-core-shared-training/microarray-analysis

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Commits on Feb 21, 2017
Upload correct compiled html of downstream tutorial
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Commits on Feb 20, 2017
upload imported version of GSE33126
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Question about what types of QA can be applied to GEO data
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Commits on Feb 19, 2017
update course zip
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Merge branch 'master' of https://github.com/bioinformatics-core-shared-training/microarray-analysis
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Some explanation of RLE and NUSE
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code to draw a boxplot
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Commits on Feb 15, 2017
quick pass through clustering section
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thoughts about packages and QA
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Commits on Feb 10, 2017
update the zip file
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Change the figure dimensions of the cross-validation plot so that it hopefully displays ok
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note that downstream tools can be used on ot 10000 her data
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create solutions document and remove answers from files to be presented
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new zip file with correct GSE18088
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update with a much smaller zip file
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Make arrayQualityMetrics optional
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Add course zip file
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Add Major Centre logo
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Add Oscars updates
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Commits on Feb 6, 2017
Fix a few typos
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remove some more files
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remove some files no longer required
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Commits on Feb 3, 2017
Note about enrichment line
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re-imagine enrichment and annotation as a notebook
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add some more missing images and script
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Re-working of PCA section
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Commits on Feb 2, 2017
re-worked downstream tutorial to cover theory and practical
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Commits on Jan 31, 2017
New downstream tutorial combining both theory and walkthrough
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Add unsupervised methods theory
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New notebooks for Day 1
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Commits on Jan 24, 2017
New R notebooks format for 2017 course
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Commits on Feb 22, 2016
a bit of warning on log-odds
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Add MDS plot and WGCNA example
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slight update to dockerfile
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update getting data R script
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