include history.md

include LICENSE

include readme.md

include setup.py

include examples/demo.fasta.gz

include examples/demo.fastq.gz

include examples/demo.m8

include examples/demo.sam

include humann/tools/README.txt

include humann/maintenance/README.md

include humann/maintenance/metacyc_swissprot_trembl_reference_databases.md

prune humann/quantify/MinPath

exclude humann/data/misc/map_eggnog_name.txt.gz

exclude humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz

exclude humann/data/misc/map_infogo1000_uniref50.txt.gz

exclude humann/data/misc/map_infogo1000_uniref90.txt.gz

exclude humann/data/misc/map_uniref90_name.txt.bz2

exclude humann/data/misc/map_go_uniref50.txt.gz

exclude humann/data/misc/map_go_uniref90.txt.gz

exclude humann/data/misc/map_ko_uniref50.txt.gz

exclude humann/data/misc/map_ko_uniref90.txt.gz

exclude humann/data/misc/map_level4ec_uniref50.txt.gz

exclude humann/data/misc/map_level4ec_uniref90.txt.gz

exclude humann/data/misc/map_pfam_uniref50.txt.gz

exclude humann/data/misc/map_pfam_uniref90.txt.gz

exclude humann/data/misc/uniref50-tol-lca.dat.gz

exclude humann/data/misc/uniref90-tol-lca.dat.gz

exclude humann/data/misc/map_eggnog_uniref50.txt.gz

exclude humann/data/misc/map_eggnog_uniref90.txt.gz