This is a strange fenomenon that occures when I edit the header script and save it. For some unknown reason after saving I will find that both my logo and favicon are missing and their fields are cleared, causing me to reupload them over and over each time I edit my script.
The Admin page for site settings, as you will see both images are not visible in the configuration as they should be.

I am trying to edit this section and I am not touching the logo area and each save I make will reset my logo and favicon.

I am not sure really what to check or trace, I don't see any errors it all seems to work fine but still something is causing this very annoying issue.