Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.
Installing the package from Bioconductor.
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
BiocManager::install("Statial")Otherwise, install the development version from GitHub.
# Install the development version from GitHub:
# install.packages("devtools")
devtools::install_github("SydneyBioX/Statial")
library(Statial)Statial is still under active development. We would greatly appreciate any and
all feedback related to the package.
- R package related issues should be raised here.
- For general questions and feedback, please contact us directly via ellis.patrick@sydney.edu.au.
- Farhan Ameen - Linkedin
- Sourish Iyengar
- Alex Qin - Linkedin
- Shila Ghazanfar - @shazanfar
- Ellis Patrick - @TheEllisPatrick
Farhan Ameen, Nicholas Robertson, David M. Lin, Shila Ghazanfar, Ellis Patrick
bioRxiv 2024.09.03.611109; doi: https://doi.org/10.1101/2024.09.03.611109