We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
22 10:55:53.983] [idxdepth] [92186] [info] BAM: FB1.rmdup.bam �[00m�[1m[2024-06-22 10:55:53.983] [idxdepth] [92186] [info] Reference: /home/Dongxianggui/11.PXX/01.NCBI/GCF_009806435.1_UM_NZW_1.0_genomic.fna �[00m�[1m[2024-06-22 10:55:54.010] [idxdepth] [92186] [info] Output path: FB1.depth.json �[00m�[33m�[1m[2024-06-22 10:55:57.265] [idxdepth] [92186] [warning] BAM header only has a subset of the reference chromosomes -- please make sure they match! �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067375.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067376.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067377.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067378.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067379.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067380.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067381.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067382.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067383.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067384.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067385.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067386.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067387.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067388.1 �[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067389.1
Hello, author, I'm sure there are all chromosomes in my bam file, but why is there such an error message? It skipped all my chromosomes.
The text was updated successfully, but these errors were encountered:
No branches or pull requests
22 10:55:53.983] [idxdepth] [92186] [info] BAM: FB1.rmdup.bam
�[00m�[1m[2024-06-22 10:55:53.983] [idxdepth] [92186] [info] Reference: /home/Dongxianggui/11.PXX/01.NCBI/GCF_009806435.1_UM_NZW_1.0_genomic.fna
�[00m�[1m[2024-06-22 10:55:54.010] [idxdepth] [92186] [info] Output path: FB1.depth.json
�[00m�[33m�[1m[2024-06-22 10:55:57.265] [idxdepth] [92186] [warning] BAM header only has a subset of the reference chromosomes -- please make sure they match!
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067375.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067376.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067377.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067378.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067379.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067380.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067381.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067382.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067383.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067384.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067385.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067386.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067387.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067388.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067389.1
Hello, author, I'm sure there are all chromosomes in my bam file, but why is there such an error message? It skipped all my chromosomes.
The text was updated successfully, but these errors were encountered: