8000 Multi-fidelity ABC · Issue #496 · ICB-DCM/pyABC · GitHub
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Multi-fidelity ABC #496

@yannikschaelte

Description

@yannikschaelte

Feature description
Implement the ability to use low-fidelity models with separate acceptance criterion, to determine whether to simulate the costly high-fidelity model via early rejection/acceptance, and thus overall reduce the required number of high-fidelity model simulations.

E.g. based on:

Requires:

  • Definition of low-fidelity simulators
  • Separate acceptance threshold schemes and distance functions. Can adaptive schemes be used, if e.g. not all particles have high-fidelity simulations?
  • Storage extension
  • Potentially low-fidelity templates for common models, such as discretization, tau leaping, ML approaches (require separate training)

Motivation/Application
Reduce overall required number of costly high-fidelity simulations by determining early whether a parameter is promising.

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