8000 Merge pull request #225301 from Homebrew/bump-htslib-1.22 · Homebrew/homebrew-core@ee1229e · GitHub
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Merge pull request #225301 from Homebrew/bump-htslib-1.22
bcftools htslib samtools 1.22
2 parents d6eaa3c + b2cdae9 commit ee1229e

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4 files changed

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-33
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4 files changed

+30
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‎.github/autobump.txt

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@@ -263,6 +263,7 @@ bbot
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bbtools
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bc
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bc-gh
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bcftools
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bcoin
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bcpp
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bde
@@ -1566,6 +1567,7 @@ htmlq
15661567
htmltest
15671568
htop
15681569
htpdate
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htslib
15691571
httm
15701572
httpd
15711573
httpie
@@ -3246,6 +3248,7 @@ safety
32463248
sagittarius-scheme
32473249
samba
32483250
saml2aws
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samtools
32493252
sbcl
32503253
sbom-tool
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sbt

‎Formula/b/bcftools.rb

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class Bcftools < Formula
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desc "Tools for BCF/VCF files and variant calling from samtools"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/bcftools/releases/download/1.21/bcftools-1.21.tar.bz2"
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sha256 "528a4cc1d3555368db75a700b22a3c95da893fd1827f6d304716dfd45ea4e282"
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url "https://github.com/samtools/bcftools/releases/download/1.22/bcftools-1.22.tar.bz2"
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sha256 "f2ab9e2f605b1203a7e9cbfb0a3eb7689322297f8c34b45dc5237fe57d98489f"
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# The bcftools source code is MIT/Expat-licensed, but when it is configured
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# with --enable-libgsl the resulting executable is GPL-licensed.
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license "GPL-3.0-or-later"
@@ -13,15 +13,13 @@ class Bcftools < Formula
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end
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bottle do
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sha256 arm64_sequoia: "24923a0c1f5695cebd051f338ae43f532183f086afb5be6284a2a28b26aa3296"
17-
sha256 arm64_sonoma: "c3f336afc9026b9b782a955e4105d208bab0ec6f8f1701171d3093bff70487e0"
18-
sha256 arm64_ventura: "f380f5a44355aa36e14234551ef6cadd5c8cae4889af33acaa12f3759309e04b"
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sha256 arm64_monterey: "a59a1531f579d313e6d4650a47e75d93b5a978758a67b0dd417aabd507994e00"
20-
sha256 sonoma: "ed2ea3659a829947e39e6a9fc8c295f483052a7e54f7b369682a1dc4574d52cf"
21-
sha256 ventura: "a0dea566d19deacb5b1d6886c2f7b21a49a01cfb554efbe2d4462e1a0edbfc81"
22-
sha256 monterey: "49ed253ef4ddfeaa96b1a96c4b51c60992cf1248f087ab8bd534c82facdb6a44"
23-
sha256 arm64_linux: "4582498f2464536ab620d6356fc64a5057b611da880c4a86a064dea155597dc0"
24-
sha256 x86_64_linux: "d0b13624d5d87f0b28715e7ce74b3c78daf2f6a3db7f025a6b9fd434f0aff2f8"
16+
sha256 arm64_sequoia: "7bfda27c183789cb73ade0e4aeb4437a31edbee0bc0cfd16191ad3572f4d9f44"
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sha256 arm64_sonoma: "b158694e48f72aa30dfa323d0ff8ef2745f57eab6d0e0092b5178e5506c834e9"
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sha256 arm64_ventura: "daf93a78cf3d50e8773288a2c0e0f7464e9a8ef8c81e3f9e1e5bd432c6aec16b"
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sha256 sonoma: "a731d55be4c06169d30f2669fbffa00c8b4020a2d284e4c6f61aa5b765fdcd4d"
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sha256 ventura: "d4df4f2814fb3f2d29454603ea88e37bd2c49b38f911c23e31a2961f3db76c78"
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sha256 arm64_linux: "11f49299a8d6388e7cfc6d7e7e90b443fb60804c3c3a488aac024d5e72a74789"
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sha256 x86_64_linux: "2879fc83d17d2474f2bdb37f44418953b75565cb4553501ba4da054fd373547e"
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end
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depends_on "gsl"

‎Formula/h/htslib.rb

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@@ -1,8 +1,8 @@
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class Htslib < Formula
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desc "C library for high-throughput sequencing data formats"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/htslib/releases/download/1.21/htslib-1.21.tar.bz2"
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sha256 "84b510e735f4963641f26fd88c8abdee81ff4cb62168310ae716636aac0f1823"
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url "https://github.com/samtools/htslib/releases/download/1.22/htslib-1.22.tar.bz2"
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sha256 "6250c1df297db477516e60ac8df45ed75a652d1f25b0f37f12f5b17269eafde9"
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license "MIT"
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livecheck do
@@ -11,15 +11,13 @@ class Htslib < Formula
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end
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bottle do
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sha256 cellar: :any, arm64_sequoia: "5666590893b28330ba567928e6c9a3f9df35f31bbe1141715f598943ea2792ac"
15-
sha256 cellar: :any, arm64_sonoma: "13cfebf52afda554d0356c9c15fadaf0361a13b63354f6fd6408070cc2189dc2"
16-
sha256 cellar: :any, arm64_ventura: "140f35781a6dca49898ee9b16cd8d9566b67147508604da63b1dc614cf4acad9"
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sha256 cellar: :any, arm64_monterey: "6631954131f70ee19111f4c9f1c7920995333638a66959714d63bb81effdd07f"
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sha256 cellar: :any, sonoma: "9242245655ac588d50e779950bd07525c5a5ffa3fd84531d837336c67dd5c85c"
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sha256 cellar: :any, ventura: "5fb7968f1ee7824d0c42550ba6441559f3d2d61ded9b838fbc9e4681f8b9a0e7"
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sha256 cellar: :any, monterey: "7643426f0e6a8958f63fdc0cb0fe0c259e1da50eb22d19f74f26a53f62520309"
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sha256 cellar: :any_skip_relocation, arm64_linux: "97b70d9fd20c7fd47e0b50c2a1cdade309327051a43b6c9b0ec306971deabb7b"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "f5a5a9b188b427ad39f32bd45f8420f46e7bb0d4fc03e1eb46a3b1f78d97d67d"
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sha256 cellar: :any, arm64_sequoia: "3f2f3384d807cf96d55f5d9ee31b073b289fb4c64ba9a11f8fb3242d8dc1858e"
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sha256 cellar: :any, arm64_sonoma: "3c77b5d9fd49d47b2b564b8ee27fc49e9edd26823acd90f9404e20a9e2475fe8"
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sha256 cellar: :any, arm64_ventura: "75e8ee504a3eab812f7d89466eae548555326d402cb88fdb5ba055795b903926"
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sha256 cellar: :any, sonoma: "e01127e06e3b038b2b369282b0eea80e150ddd9af5ad19425acdbe41656df073"
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sha256 cellar: :any, ventura: "11d618732f21f25791476ded2decbde94109ec1a40eb790f49936f825b07f4d6"
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sha256 cellar: :any_skip_relocation, arm64_linux: "9fc3eb865aaa8f8c3d586cb7dcc70b46178a5e16e6a5a68d6b1af8f7ada4974e"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "b91e2b3ea97ac6210260a78519720b6b560cd8c4f86761d75ec72d8fbe312f55"
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end
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depends_on "libdeflate"

‎Formula/s/samtools.rb

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class Samtools < Formula
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desc "Tools for manipulating next-generation sequencing data"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/samtools/releases/download/1.21/samtools-1.21.tar.bz2"
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sha256 "05724b083a6b6f0305fcae5243a056cc36cf826309c3cb9347a6b89ee3fc5ada"
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url "https://github.com/samtools/samtools/releases/download/1.22/samtools-1.22.tar.bz2"
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sha256 "4911d01720f246cb97855870b410bbe4d2c2fd7fbf823ea0f7daf0f32545819d"
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license "MIT"
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bottle do
9-
sha256 cellar: :any, arm64_sequoia: "0fd24379c43d47525d722a4220c1564bb59fe969eb2161e62aba519e73523c30"
10-
sha256 cellar: :any, arm64_sonoma: "c7625984593989f64b6872232c65487466ca5f8f8429d64d858316c93ad50381"
11-
sha256 cellar: :any, arm64_ventura: "b3f4e88d641907504ccb2378c69b6386fd37ae5c82b2344af678e386ca360266"
12-
sha256 cellar: :any, arm64_monterey: "87a313d7110756bd669a18a3090750f9b03269404b9a61a1cf143575defd5dcc"
13-
sha256 cellar: :any, sonoma: "9b9864f309544aa5aee0e8b6ed0eaae5c0e7c2a3920607aad6afdb7bbc2b6da9"
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sha256 cellar: :any, ventura: "2dd72265adf5a7e652d0f60f4f07bc041f6bfaad7403abe615330807a7168ed7"
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sha256 cellar: :any, monterey: "4c375467980995250fb1a8a9e4b67ac57607a546c478e28363feafe29d009510"
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sha256 cellar: :any_skip_relocation, arm64_linux: "a448cbc74643212066c8109db596300d2b7f64e22404b9ed7e3453c3b0b12c7e"
17-
sha256 cellar: :any_skip_relocation, x86_64_linux: "1b81f8cbedc6b82d62a3fe9ab64e91b5e437e1492927a5ea7172d1f9341ec627"
9+
sha256 cellar: :any, arm64_sequoia: "220446fda87460adab2eb115c4544317ac4efbd4fde226b912910500953de9f1"
10+
sha256 cellar: :any, arm64_sonoma: "2e5e85e52f71cc46f3a13deb0f1846fb878f24aec58f820d92f0ceb7214b6a11"
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sha256 cellar: :any, arm64_ventura: "e22d88a95b2c57696e3d044023e8361a88e318815b541303b9306a33fce8c5fc"
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sha256 cellar: :any, sonoma: "ac88a58eed05adb2d30fcaec291456cdcd4ec4389ce6849e010440447279dd3e"
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sha256 cellar: :any, ventura: "585ae2c4165a6eb58e5ae1743fb0b2d0cdac37f0d49ef90ff1dad7a401c0a95b"
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sha256 cellar: :any_skip_relocation, arm64_linux: "58b35560dde7b56963008cb3339d6636013058fc456b7bdb2115875675892a01"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "cc61d5a65fc6f459e390a0b39bd2d3cb9b4d0fd8c074d7d0e059cd165d44ade4"
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end
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depends_on "htslib"

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