flye 2.9.6 (new formula)

ankane · ankane · commit af0867a07761 · 2025-05-29T19:43:52.000-07:00
diff --git a/Formula/f/flye.rb b/Formula/f/flye.rb
@@ -0,0 +1,27 @@
+class Flye < Formula
+  include Language::Python::Virtualenv
+
+  desc "De novo assembler for single molecule sequencing reads using repeat graphs"
+  homepage "https://github.com/mikolmogorov/Flye"
+  url "https://github.com/mikolmogorov/Flye/archive/refs/tags/2.9.6.tar.gz"
+  sha256 "f05a3889b1c7aafed4cc0ed1adc1f19c22618c1c7b97ab5f80d388c8192bd32a"
+  license all_of: ["BSD-3-Clause", "Apache-2.0", "BSD-2-Clause", "BSL-1.0", "MIT"]
+  head "https://github.com/mikolmogorov/Flye.git", branch: "flye"
+
+  depends_on "python@3.13"
+
+  uses_from_macos "zlib"
+
+  def install
+    ENV.deparallelize
+    virtualenv_install_with_resources
+    pkgshare.install "flye/tests/data"
+  end
+
+  test do
+    assert_match version.to_s, shell_output("#{bin}/flye --version")
+    cp_r pkgshare/"data/.", testpath
+    system bin/"flye", "--pacbio-corr", "ecoli_500kb_reads_hifi.fastq.gz", "-o", testpath
+    assert_path_exists "assembly.fasta"
+  end
+end
