trimal 1.5.0 (new formula)

ankane · ankane · commit 9cc67b1ffa55 · 2025-05-27T19:21:03.000-07:00
diff --git a/Formula/t/trimal.rb b/Formula/t/trimal.rb
@@ -0,0 +1,24 @@
+class Trimal < Formula
+  desc "Automated alignment trimming in large-scale phylogenetic analyses"
+  homepage "https://trimal.readthedocs.io/"
+  url "https://github.com/inab/trimal/archive/refs/tags/v1.5.0.tar.gz"
+  sha256 "3fba2e07bffb7290c34e713a052d0f0ff1ce0792861740a8cec46f40685c6d73"
+  license "GPL-3.0-only"
+  head "https://github.com/inab/trimal.git", branch: "trimAl"
+
+  def install
+    cd "source" do
+      system "make"
+      bin.install "readal", "trimal", "statal"
+    end
+  end
+
+  test do
+    (testpath/"test.fasta").write <<~EOS
+      >U00096.2:1-70
+      AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
+    EOS
+    system bin/"trimal", "-in", "test.fasta", "-out", "out.fasta"
+    assert_path_exists "out.fasta"
+  end
+end
