Merge pull request #224920 from ankane/trimal

BrewTestBot · web-flow · commit 1ae9395062db · 2025-05-28T03:30:26.000Z
trimal 1.5.0 (new formula)
diff --git a/Formula/t/trimal.rb b/Formula/t/trimal.rb
@@ -0,0 +1,33 @@
+class Trimal < Formula
+  desc "Automated alignment trimming in large-scale phylogenetic analyses"
+  homepage "https://trimal.readthedocs.io/"
+  url "https://github.com/inab/trimal/archive/refs/tags/v1.5.0.tar.gz"
+  sha256 "3fba2e07bffb7290c34e713a052d0f0ff1ce0792861740a8cec46f40685c6d73"
+  license "GPL-3.0-only"
+  head "https://github.com/inab/trimal.git", branch: "trimAl"
+
+  bottle do
+    sha256 cellar: :any_skip_relocation, arm64_sequoia: "7601f4fa41f4b2c49221fcfd10680dae2d7ba2ecf7b118ada2626df50b3dfe56"
+    sha256 cellar: :any_skip_relocation, arm64_sonoma:  "0d9046969829e57b325ddb627977fccaf33ec9b3b9dd17fdd1acec4c45af0ed7"
+    sha256 cellar: :any_skip_relocation, arm64_ventura: "4a64b8c35e66ccd823b1778665bebc09a42c5d630897591c18fd8b50b68f9ec6"
+    sha256 cellar: :any_skip_relocation, sonoma:        "6b995bc17baddfea2602992cf14f32151e5e96967fe64d4fb75b11529b47f54c"
+    sha256 cellar: :any_skip_relocation, ventura:       "c08772fe873d74045bb407315005b425aff589897efa1e76bd505c7e78d6200e"
+    sha256 cellar: :any_skip_relocation, x86_64_linux:  "fbdf2569d36a67e7381636245466bc4747821e04db83d1c6883b9a632920054f"
+  end
+
+  def install
+    cd "source" do
+      system "make"
+      bin.install "readal", "trimal", "statal"
+    end
+  end
+
+  test do
+    (testpath/"test.fasta").write <<~EOS
+      >U00096.2:1-70
+      AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
+    EOS
+    system bin/"trimal", "-in", "test.fasta", "-out", "out.fasta"
+    assert_path_exists "out.fasta"
+  end
+end
