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{{Infobox Software
|name                       = BioPHP
|logo                       = 
|screenshot                 = 
|caption                    = 
|collapsible                = 
|author                     = Dr. Joseba Bikandi
|developer                  = 
|released                   = <!--{{Start date|2002|06|11|df=yes}}-->
|latest release version     = 
|latest release date        = <!--{{Release date and age|2011|04|14|df=yes}}-->
|latest preview version     = 
|latest preview date        = 
|programming language       = [[PHP]]
|operating system           = 
|platform                   = Cross-platform
|size                       = 
|language                   = 
|status                     = <!--Active-->
|genre                      = [[Bioinformatics]]
|license                    = GNU [[GPL]] version 2
|website                    = {{URL|http://biophp.org/}}
}}
'''BioPHP''' is a collection of [[open-source software|open-source]] [[PHP]] code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other [[bioinformatics]] tools. BioRuby is released under the [[GNU GPL]] version 2 licence<ref name=biophp-wiki>{{cite web|title=BioPHP Wiki - Info|url=http://biophp.org/info.html|access-date=13 August 2015}}</ref> and is one of a number of Bio* projects, designed to reduce [[Duplicate code|code duplication]].<ref name="pmid12230038">{{cite journal| author=Mangalam H| title=The Bio* toolkits--a brief overview. | journal=Brief Bioinform | year= 2002 | volume= 3 | issue= 3 | pages= 296–302 | pmid=12230038 | doi= 10.1093/bib/3.3.296| doi-access= free }}</ref> As an open source bioinformatics project, BioPHP is affiliated with the [[Open Bioinformatics Foundation]].<ref name=obf-projects>{{cite web|title=Projects - Open Bioinformatics Foundation|url=http://www.open-bio.org/wiki/Projects|access-date=13 August 2015}}</ref>

==History==
The BioPHP project grew out of GenePHP, which was started by Serge Gregorio in 2003. GenePHP was conceived as a PHP-based implementation of similar bioinformatics packages such as [[BioPerl]] and [[BioPython]] and [[BioRuby]]. BioPHP was developed in December 2005 by Joseba Bikandi at the [[University of the Basque Country]], [[Spain]] as an extension of GenePHP. GenePHP is one of the four projects currently forming BioPHP.<ref name=biophp-wiki />

==Projects==
BioPHP is divided into four 'projects'. The '''GenePHP''' project has a similar structure to other Bio* projects, with a number of classes representing (amongst other things) DNA and protein sequences and sequence alignments. Each class is designed to be general enough to be useful in a number of BioPHP projects. Similarly, the '''Functions''' project aims to create a number of functions to perform tasks on class objects and reduce code duplication between projects. The '''Minitools''' and '''Tools''' projects aim to generate a set of PHP scripts for small, repetitive tasks; scripts in the Tools project generally have special requirements, such as interfacing with non-PHP scripts and/or code (written in, for instance, [[Perl]] or [[C (programming language)|C]]).<ref name=biophp-wiki />

==See also==
*[[Open Bioinformatics Foundation]]

==References==
{{reflist|2}}

==External links==
*{{Official website|http://biophp.org/}}
*[http://plasmidb.sourceforge.net/bio/doc/index.html An object-oriented BioPHP]
*[https://code.google.com/p/biophp Lee Katz's biophp]

[[Category:Free bioinformatics software]]
[[Category:Bioinformatics software]]
[[Category:PHP software]]

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