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Yunping Zhu
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2020 – today
- 2024
- [c5]Jie He, Lei Yang, Yunping Zhu, Donglian Li, Zhixing Ding, Yuhuan Lu, Bocheng Liang, Shengli Li:
Fetal Cardiac Structure Detection Using Multi-task Learning. ICIC (LNBI 2) 2024: 405-419 - 2023
- [j26]Xiaojing Wu, Mingfei Han, Xinyu Song, Song He, Xiaochen Bo, Yunping Zhu:
COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods. Bioinform. 39(12) (2023) - [j25]Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno:
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Res. 51(D1): 1539-1548 (2023) - 2022
- [j24]Tao Chen, Jie Ma, Yi Liu, Zhiguang Chen, Nong Xiao, Yutong Lu, Yinjin Fu, Chunyuan Yang, Mansheng Li, Songfeng Wu, Xue Wang, Dongsheng Li, Fuchu He, Henning Hermjakob, Yunping Zhu:
iProX in 2021: connecting proteomics data sharing with big data. Nucleic Acids Res. 50(D1): 1522-1527 (2022) - 2020
- [j23]Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno:
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48(Database-Issue): D1145-D1152 (2020)
2010 – 2019
- 2019
- [j22]Cheng Chang, Mansheng Li, Chaoping Guo, Yuqing Ding, Kaikun Xu, Mingfei Han, Fuchu He, Yunping Zhu:
PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis. Bioinform. 35(5): 898-900 (2019) - [j21]Xian Liu, Mingfei Han, Chen Zhao, Cheng Chang, Yunping Zhu, Changhui Ge, Ronghua Yin, Yiqun Zhan, Changyan Li, Miao Yu, Fuchu He, Xiaoming Yang:
KeggExp: a web server for visual integration of KEGG pathways and expression profile data. Bioinform. 35(8): 1430-1432 (2019) - [j20]Chuang Li, Kenli Li, Tao Chen, Yunping Zhu, Qiang He:
SW-Tandem: a highly efficient tool for large-scale peptide identification with parallel spectrum dot product on Sunway TaihuLight. Bioinform. 35(19): 3861-3863 (2019) - [j19]Jie Ma, Tao Chen, Songfeng Wu, Chunyuan Yang, Mingze Bai, Kunxian Shu, Kenli Li, Guoqing Zhang, Zhong Jin, Fuchu He, Henning Hermjakob, Yunping Zhu:
iProX: an integrated proteome resource. Nucleic Acids Res. 47(Database-Issue): D1211-D1217 (2019) - [c4]Moucheng Yang, Tao Chen, Xuegong Zhou, Liang Zhao, Yunping Zhu, Lingli Wang:
A Complete CPU-FPGA Architecture for Protein Identification with Tandem Mass Spectrometry. FPT 2019: 295-298 - 2018
- [j18]Cheng Chang, Kaikun Xu, Chaoping Guo, Jinxia Wang, Qi Yan, Jian Zhang, Fuchu He, Yunping Zhu:
PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data. Bioinform. 34(20): 3594-3596 (2018) - 2017
- [j17]Chuang Li, Tao Chen, Qiang He, Yunping Zhu, Kenli Li:
MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework. Bioinform. 33(6): 944-946 (2017) - [j16]Tao Chen, Mansheng Li, Qiang He, Lei Zou, Youhuan Li, Cheng Chang, Dongyan Zhao, Yunping Zhu:
LiverWiki: a wiki-based database for human liver. BMC Bioinform. 18(1): 452:1-452:11 (2017) - [j15]Xiao-dong Feng, Li-wei Li, Jianhong Zhang, Yun-ping Zhu, Cheng Chang, Kun-xian Shu, Jie Ma:
Using the entrapment sequence method as a standard to evaluate key steps of proteomics data analysis process. BMC Genom. 18(S2) (2017) - 2015
- [j14]Tao Chen, Jie Zhao, Jie Ma, Yunping Zhu:
Web Resources for Mass Spectrometry-based Proteomics. Genom. Proteom. Bioinform. 13(1): 36-39 (2015) - [j13]Fan Zhang, Yunping Zhu, Tomonari Furukawa, Wanqing Song:
Kinematic Analysis of a Partially Decoupled 3-DOF Parallel Wrist. J. Robotics 2015: 790414:1-790414:9 (2015) - 2014
- [j12]Cheng Chang, Jiyang Zhang, Mingfei Han, Jie Ma, Wei Zhang, Songfeng Wu, Kehui Liu, Hongwei Xie, Fuchu He, Yunping Zhu:
SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods. Bioinform. 30(4): 586-587 (2014) - 2013
- [j11]Wei Liu, Dong Li, Yunping Zhu, Hongwei Xie, Fuchu He:
Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations. IEEE ACM Trans. Comput. Biol. Bioinform. 10(2): 514-521 (2013) - 2012
- [j10]Pengyi Yang, Jie Ma, Penghao Wang, Yunping Zhu, Bing Bing Zhou, Jean Yee Hwa Yang:
Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1273-1280 (2012) - [c3]Hao Guo, Yunping Zhu, Dong Li, Fuchu He, Qijun Liu:
Using NMFAS to identify key biological pathways associated with human diseases. ISB 2012: 79-85 - 2011
- [j9]Lin Hou, Lin Wang, Minping Qian, Dong Li, Chao Tang, Yunping Zhu, Minghua Deng, Fangting Li:
Modular analysis of the probabilistic genetic interaction network. Bioinform. 27(6): 853-859 (2011) - 2010
- [j8]Xianming Wu, Songfeng Wu, Dong Li, Jiyang Zhang, Lin Hou, Jie Ma, Wanlin Liu, Daming Ren, Yunping Zhu, Fuchu He:
Computational identification of rare codons of Escherichia coli based on codon pairs preference. BMC Bioinform. 11: 61 (2010) - [j7]Wanlin Liu, Dong Li, Qijun Liu, Yunping Zhu, Fuchu He:
A novel parametric approach to mine gene regulatory relationship from microarray datasets. BMC Bioinform. 11(S-11): S15 (2010)
2000 – 2009
- 2009
- [c2]Qijun Liu, Zhenghua Wang, Hanchang Sun, Hao Guo, Wanlin Liu, Yunping Zhu:
A Semiautomatic Method to Achieve Independent and Intact Gene Ontology Slim (InitGO) and its Cytoscape Plugin Implementation. BMEI 2009: 1-4 - [c1]Tingting Zhou, Samuel K. F. Yung, Zhenghua Wang, Yunping Zhu:
A New Recursive Approach for Reconstructing Metabolic Networks from KEGG. FCST 2009: 510-515 - 2008
- [j6]Jiyang Zhang, Jianqi Li, Xin Liu, Hongwei Xie, Yunping Zhu, Fuchu He:
A nonparametric model for quality control of database search results in shotgun proteomics. BMC Bioinform. 9 (2008) - 2006
- [j5]Wei Liu, Dong Li, Jiyang Zhang, Yunping Zhu, Fuchu He:
SigFlux: A novel network feature to evaluate the importance of proteins in signal transduction networks. BMC Bioinform. 7: 515 (2006) - [j4]Xing-Ming Zhao, Ji-Xiang Du, Hong-Qiang Wang, Yunping Zhu, Yixue Li:
A new technique for selecting features from protein sequences. Int. J. Pattern Recognit. Artif. Intell. 20(2): 271-283 (2006) - [j3]Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yunping Zhu:
Tumor classification based on independent component analysis. Int. J. Pattern Recognit. Artif. Intell. 20(2): 297-310 (2006) - 2005
- [j2]Guang-Zheng Zhang, De-Shuang Huang, Yunping Zhu, Yi-Xue Li:
Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognit. Lett. 26(15): 2346-2352 (2005)
1990 – 1999
- 1999
- [j1]Huaiqun Guan, M. Waleed Gaber, Frank A. DiBianca, Yunping Zhu:
CT reconstruction by using the MLS-ART technique and the KCD imaging system. IEEE Trans. Medical Imaging 18(4): 355-358 (1999)
Coauthor Index
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