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2010 – 2019
- 2016
[j11]Deepak Nag Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan, Shili Lin:
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. Briefings Bioinform. 17(6): 926-937 (2016)- 2014
- [j10]David E. Frankhouser, Mark Murphy, James S. Blachly
, Jincheol Park, Mike W. Zoller, Javkhlan-Ochir Ganbat, John Curfman, John C. Byrd, Shili Lin, Guido Marcucci, Pearlly Yan, Ralf Bundschuh:
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data. Bioinform. 30(24): 3567-3574 (2014) - 2011
- [j9]Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Preprocessing differential methylation hybridization microarray data. BioData Min. 4: 13 (2011) - [j8]Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin:
Identifying hypermethylated CpG islands using a quantile regression model. BMC Bioinform. 12: 54 (2011) - [j7]Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li:
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer. BMC Syst. Biol. 5: 67 (2011) - [c3]Benjamin Rodriguez, Hok-Hei Tam, David Frankhouser, Michael Trimarchi, Mark Murphy, Chris Kuo, Deval Parikh, Bryan Ball, Sebastian Schwind, John Curfman, William Blum, Guido Marcucci, Pearlly Yan, Ralf Bundschuh:
A scalable, flexible workflow for MethylCap-seq data analysis. GENSiPS 2011: 1-4
2000 – 2009
- 2009
- [j6]Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang:
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinform. 25(18): 2334-2340 (2009) - [j5]Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinform. 10: 404 (2009) - [j4]Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri:
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules. BMC Syst. Biol. 3: 73 (2009) - [c2]Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç:
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM 2009: 392-395 - 2008
- [j3]Wei Dai, Jens M. Teodoridis, Janet Graham, Constanze Zeller, Tim Hui-Ming Huang, Pearlly Yan, J. Keith Vass, Robert Brown, Jim Paul:
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands. BMC Bioinform. 9 (2008) - [j2]Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Probe signal correction for differential methylation hybridization experiments. BMC Bioinform. 9 (2008) - 2007
- [j1]Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin:
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinform. 8 (2007) - 2001
- [c1]Harpreet K. Monga, Adam L. Asare, Pearlly Yan, Tim Hui-Ming Huang, Charles William Caldwell:
Online Microarray Laboratory Information Management System (M-LIMS): Linking Health Informatics and Bioinformatics. AMIA 2001
Coauthor Index
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