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2020 – today
- 2023
[j14]Nikolai Romashchenko
, Benjamin Linard, Fabio Pardi, Eric Rivals:
EPIK: precise and scalable evolutionary placement with informative k-mers. Bioinform. 39(12) (2023)- [j13]Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi:
Computing Phylo-$k$k-Mers. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2889-2897 (2023) - 2021
- [j12]Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals:
PEWO: a collection of workflows to benchmark phylogenetic placement. Bioinform. 36(21): 5264-5266 (2021) - [j11]Guillaume E. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi:
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers. Bioinform. 36(22-23): 5351-5360 (2021) - [j10]Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman:
A phylogenetic approach for weighting genetic sequences. BMC Bioinform. 22(1): 285 (2021) - [j9]Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca:
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo. PLoS Comput. Biol. 17(9) (2021) - 2020
- [i4]Jakub Truszkowski, Céline Scornavacca, Fabio Pardi:
Computing the probability of gene trees concordant with the species tree in the multispecies coalescent. CoRR abs/2001.06741 (2020)
2010 – 2019
- 2019
- [j8]Benjamin Linard, Krister M. Swenson, Fabio Pardi:
Rapid alignment-free phylogenetic identification of metagenomic sequences. Bioinform. 35(18): 3303-3312 (2019) - [i3]Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca:
Cutting an alignment with Ockham's razor. CoRR abs/1910.11041 (2019) - 2017
- [j7]Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca:
Rearrangement moves on rooted phylogenetic networks. PLoS Comput. Biol. 13(8) (2017) - [i2]Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel:
Finding the most parsimonious or likely tree in a network with respect to an alignment. CoRR abs/1707.03648 (2017) - 2016
- [j6]Manuel Binet, Olivier Gascuel, Céline Scornavacca, Emmanuel J. P. Douzery, Fabio Pardi:
Fast and accurate branch lengths estimation for phylogenomic trees. BMC Bioinform. 17: 23 (2016) - [r1]Olivier Gascuel, Fabio Pardi, Jakub Truszkowski:
Distance-Based Phylogeny Reconstruction: Safety and Edge Radius. Encyclopedia of Algorithms 2016: 567-571 - [i1]Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca:
Do branch lengths help to locate a tree in a phylogenetic network? CoRR abs/1607.06285 (2016) - 2015
- [j5]Fabio Pardi, Céline Scornavacca:
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable. PLoS Comput. Biol. 11(4) (2015) - 2010
- [j4]Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport:
Approximate Maximum Parsimony and Ancestral Maximum Likelihood. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 183-187 (2010)
2000 – 2009
- 2009
- [j3]Bui Quang Minh, Fabio Pardi, Steffen Klaere, Arndt von Haeseler:
Budgeted Phylogenetic Diversity on Circular Split Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 6(1): 22-29 (2009) - 2008
- [j2]Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia:
Determination and validation of principal gene products. Bioinform. 24(1): 11-17 (2008) - 2005
- [j1]Fabio Pardi, Douglas F. Levinson, Cathryn M. Lewis:
GSMA: software implementation of the genome search meta-analysis method. Bioinform. 21(24): 4430-4431 (2005) - 2002
- [c1]Fabio Pardi:
Category Similarity as a Predictor for SVM Learning Performance. FLAIRS 2002: 173-177
Coauthor Index
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