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ORCIDMakoto Taiji
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2020 – today
- 2024
[c18]Salim Khemira, Xinyuan Wang, Anh Nguyen
, Yutaka Tamiya, Makoto Taiji, Takahide Yoshikawa, Jason Helge Anderson:
Raising Compute Density of Molecular Dynamics Simulation Through Approximate Memoization. ASAP 2024: 195-203- 2022
- [j12]Keigo Nishida, Makoto Taiji:
AdamB: Decoupled Bayes by Backprop With Gaussian Scale Mixture Prior. IEEE Access 10: 92959-92970 (2022) - 2021
- [c17]Gentaro Morimoto, Yohei M. Koyama, Hao Zhang, Teruhisa S. Komatsu, Yousuke Ohno, Keigo Nishida, Itta Ohmura, Hiroshi Koyama, Makoto Taiji:
Hardware acceleration of tensor-structured multilevel ewald summation method on MDGRAPE-4A, a special-purpose computer system for molecular dynamics simulations. SC 2021: 43 - 2020
- [c16]Hao Zhang, Itta Ohmura, Makoto Taiji:
Implementing a Comprehensive Networks-on-Chip Generator with Optimal Configurations. CLUSTER 2020: 420-421
2010 – 2019
- 2015
- [j11]Takao Otsuka, Noriaki Okimoto, Makoto Taiji:
Assessment and acceleration of binding energy calculations for protein-ligand complexes by the fragment molecular orbital method. J. Comput. Chem. 36(30): 2209-2218 (2015) - 2014
- [j10]Yousuke Ohno, Rio Yokota, Hiroshi Koyama, Gentaro Morimoto, Aki Hasegawa, Gen Masumoto, Noriaki Okimoto, Yoshinori Hirano, Huda Ibeid, Tetsu Narumi, Makoto Taiji:
Petascale molecular dynamics simulation using the fast multipole method on K computer. Comput. Phys. Commun. 185(10): 2575-2585 (2014) - [j9]Junya Yamagishi, Noriaki Okimoto, Gentaro Morimoto, Makoto Taiji:
A new set of atomic radii for accurate estimation of solvation free energy by Poisson-Boltzmann solvent model. J. Comput. Chem. 35(29): 2132-2139 (2014) - 2011
- [j8]Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Höfinger:
Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3. Comput. J. 54(7): 1181-1187 (2011)
2000 – 2009
- 2009
- [j7]Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji:
A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation. Comput. Sci. Res. Dev. 24(1-2): 21-31 (2009) - [j6]Gota Kikugawa, Rossen Apostolov, Narutoshi Kamiya, Makoto Taiji, Ryutaro Himeno, Haruki Nakamura, Yasushige Yonezawa:
Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems. J. Comput. Chem. 30(1): 110-118 (2009) - [j5]Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger:
Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach. J. Comput. Chem. 30(14): 2351-2357 (2009) - [j4]Noriaki Okimoto, Noriyuki Futatsugi, Hideyoshi Fuji, Atsushi Suenaga, Gentaro Morimoto, Ryoko Yanai, Yousuke Ohno, Tetsu Narumi, Makoto Taiji:
High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations. PLoS Comput. Biol. 5(10) (2009) - [c15]Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji:
A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation. AHS 2009: 447-452 - [c14]Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji:
42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence. SC 2009 - 2008
- [j3]Tetsu Narumi, Shun Kameoka, Makoto Taiji, Kenji Yasuoka:
Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model. SIAM J. Sci. Comput. 30(6): 3108-3125 (2008) - [c13]Duraid Madina, Makoto Taiji:
Circuit and physical design of the MDGRAPE-4 on-chip network links. SLIP 2008: 59-64 - 2007
- [c12]Asaki Saito, Makoto Taiji, Takashi Ikegami:
Dynamical Singularities in Online Learning of Recurrent Neural Networks. FOCI 2007: 174-179 - [c11]Yousuke Ohno, Eiji Nishibori, Tetsu Narumi, Takahiro Koishi, Tahir H. Tahirov, Hideo Ago, Masashi Miyano, Ryutaro Himeno, Toshikazu Ebisuzaki, Makoto Sakata, Makoto Taiji:
A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3. SC 2007: 56 - 2006
- [c10]Tetsu Narumi, Yousuke Ohno, Noriaki Okimoto, Takahiro Koishi, Atsushi Suenaga, Noriyuki Futatsugi, Ryoko Yanai, Ryutaro Himeno, Shigenori Fujikawa, Makoto Taiji, Mitsuru Ikei:
Gordon Bell finalists II - A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3. SC 2006: 49 - 2004
- [j2]Toshikazu Ebisuzaki, Robert S. Germain, Makoto Taiji:
PetaFLOPS computing. Commun. ACM 47(11): 42-45 (2004) - 2003
- [c9]Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Akihiko Konagaya:
MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. PARCO 2003: 669-676 - [c8]Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya:
Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. SC 2003: 15 - 2000
- [c7]Yuzuru Sato, Makoto Taiji, Takashi Ikegami:
On the Power of Nonlinear Mappings in Switching Map Systems. UMC 2000: 234-247
1990 – 1999
- 1999
- [c6]Takashi Ikegami, Makoto Taiji:
Imitation and Cooperation in Coupled Dynamical Recognizers. ECAL 1999: 545-554 - 1998
- [b1]Junichiro Makino, Makoto Taiji:
Scientific simulations with special purpose computers - the GRAPE systems. Wiley 1998, ISBN 978-0-471-96946-4, pp. I-VIII, 1-239 - 1997
- [j1]Yuto Komeiji, Masami Uebayasi, Ryo Takata, Akihiro Shimizu, Keiji Itsukashi, Makoto Taiji:
Fast and accurate molecular dynamics simulation of a protein using a special-purpose computer. J. Comput. Chem. 18(12): 1546-1563 (1997) - 1995
- [c5]Junichiro Makino, Makoto Taiji, Toshikazu Ebisuzaki, Daiichiro Sugimoto:
GRAPE-4: A Special-Purpose Computer for Gravitational N-Body Problems. PP 1995: 343-348 - [c4]Junichiro Makino, Makoto Taiji:
Astrophysical N-body simulations on the GRAPE-4 Special-Purpose Computer. SC 1995: 63 - 1994
- [c3]Eiichiro Kokubo, Junichiro Makino, Makoto Taiji:
HARP-1: A Special-Purpose Computer for itN-body Simulation with the Hermite Integrator. HICSS (1) 1994: 292-301 - [c2]Makoto Taiji, Junichiro Makino, Toshikazu Ebisuzaki, Daiichiro Sugimoto:
GRAPE-4: A Teraflops Massively Parallel Special-Purpose Computer System for Astrophysical itN-body Simulations. IPPS 1994: 280-287 - [c1]Junichiro Makino, Makoto Taiji, Toshikazu Ebisuzaki, Daiichiro Sugimoto:
GRAPE-4: a one-Tflops special-purpose computer for astrophysical N-body problem. SC 1994: 429-438
Coauthor Index
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