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John H. Phan
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2010 – 2019
- 2016
- [c31]John H. Phan, Ryan Hoffman, Sonal Kothari, Po-Yen Wu, May D. Wang:
Integration of multi-modal biomedical data to predict cancer grade and patient survival. BHI 2016: 577-580 - [c30]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang:
A multi-modal graph-based semi-supervised pipeline for predicting cancer survival. BIBM 2016: 184-189 - [i2]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang:
A Multi-Modal Graph-Based Semi-Supervised Pipeline for Predicting Cancer Survival. CoRR abs/1611.05751 (2016) - 2015
- [c29]Cheng Yang, Po-Yen Wu, Li Tong, John H. Phan, May D. Wang:
The impact of RNA-seq aligners on gene expression estimation. BCB 2015: 462-471 - [c28]Matt Schwartz, Martin Park, John H. Phan, May D. Wang:
Integration of multimodal RNA-seq data for prediction of kidney cancer survival. BIBM 2015: 1591-1595 - [c27]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang:
A semi-supervised method for predicting cancer survival using incomplete clinical data. EMBC 2015: 210-213 - [c26]Hang Wu, John H. Phan, Ajay K. Bhatia, Caitlin A. Cundiff, Bahig M. Shehata, May D. Wang:
Detection of blur artifacts in histopathological whole-slide images of endomyocardial biopsies. EMBC 2015: 727-730 - [c25]Ying Sha, John H. Phan, May D. Wang:
Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data. EMBC 2015: 6461-6464 - [i1]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang:
A Semi-Supervised Method for Predicting Cancer Survival Using Incomplete Clinical Data. CoRR abs/1509.08888 (2015) - 2014
- [j9]Sonal Kothari, John H. Phan, Todd H. Stokes, Adeboye O. Osunkoya, Andrew N. Young, May D. Wang:
Removing Batch Effects From Histopathological Images for Enhanced Cancer Diagnosis. IEEE J. Biomed. Health Informatics 18(3): 765-772 (2014) - [c24]John H. Phan, Sonal Kothari, May D. Wang:
omniClassifier: a desktop grid computing system for big data prediction modeling. BCB 2014: 514-523 - [c23]Sahar Harati, John H. Phan, May D. Wang:
Investigation of factors affecting RNA-seq gene expression calls. EMBC 2014: 5232-5235 - [c22]Cheng Yang, Po-Yen Wu, John H. Phan, May D. Wang:
The impact of RNA-seq alignment pipeline on detection of differentially expressed genes. GlobalSIP 2014: 1376-1379 - 2013
- [j8]Po-Yen Wu, John H. Phan, May D. Wang:
Assessing the impact of human genome annotation choice on RNA-seq expression estimates. BMC Bioinform. 14(S-11): S8 (2013) - [j7]Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang:
Histological image classification using biologically interpretable shape-based features. BMC Medical Imaging 13: 9 (2013) - [j6]Sonal Kothari, John H. Phan, Todd H. Stokes, May D. Wang:
Review: Pathology imaging informatics for quantitative analysis of whole-slide images. J. Am. Medical Informatics Assoc. 20(6): 1099-1108 (2013) - [j5]John H. Phan, Andrew N. Young, May Dongmei Wang:
omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification. IEEE Trans. Biomed. Eng. 60(12): 3364-3367 (2013) - [c21]Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang:
Systematic Assessment of RNA-Seq Quantification Tools Using Simulated Sequence Data. BCB 2013: 623 - [c20]Anjaly Poruthoor, John H. Phan, Sonal Kothari, May D. Wang:
Exploration of genomic, proteomic, and histopathological image data integration methods for clinical prediction. ChinaSIP 2013: 259-263 - [c19]Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang:
Benchmarking RNA-Seq quantification tools. EMBC 2013: 647-650 - [c18]Po-Yen Wu, John H. Phan, May D. Wang:
An approach for assessing RNA-seq quantification algorithms in replication studies. GENSiPS 2013: 15-18 - 2012
- [j4]Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari, Mingqing Xu, May D. Wang, Gil Alterovitz:
Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities. Briefings Bioinform. 13(4): 430-445 (2012) - [j3]R. Mitchell Parry, John H. Phan, May D. Wang:
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems. BMC Bioinform. 13(S-3): S7 (2012) - [j2]John H. Phan, Chang F. Quo, May Dongmei Wang:
Cardiovascular Genomics: A Biomarker Identification Pipeline. IEEE Trans. Inf. Technol. Biomed. 16(5): 809-822 (2012) - [c17]Sonal Kothari, Adeboye O. Osunkoya, John H. Phan, May D. Wang:
Biological interpretation of morphological patterns in histopathological whole-slide images. BCB 2012: 218-225 - [c16]Po-Yen Wu, John H. Phan, May D. Wang:
The effect of human genome annotation complexity on RNA-Seq gene expression quantification. BIBM Workshops 2012: 712-717 - [c15]Sonal Kothari, John H. Phan, May D. Wang:
Scale normalization of histopathological images for batch invariant cancer diagnostic models. EMBC 2012: 4406-4409 - [c14]John H. Phan, Po-Yen Wu, May D. Wang:
Improving the flexibility of RNA-Seq data analysis pipelines. GENSiPS 2012: 70-73 - 2011
- [j1]Richard A. Moffitt, Qiqin Yin-Goen, Todd H. Stokes, R. Mitchell Parry, James H. Torrance, John H. Phan, Andrew N. Young, May D. Wang:
caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts. BMC Bioinform. 12: 383 (2011) - [c13]R. Mitchell Parry, John H. Phan, May D. Wang:
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems. BCB 2011: 29-38 - [c12]Po-Yen Wu, John H. Phan, Fengfeng Zhou, May D. Wang:
Evaluation of normalization methods for RNA-Seq gene expression estimation. BIBM Workshops 2011: 50-57 - [c11]Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang:
Histological Image Feature Mining Reveals Emergent Diagnostic Properties for Renal Cancer. BIBM 2011: 422-425 - [c10]Po-Yen Wu, John H. Phan, May D. Wang:
Exploring the feasibility of next-generation sequencing and microarray data meta-analysis. EMBC 2011: 7618-7621 - [c9]Sonal Kothari, John H. Phan, Richard A. Moffitt, Todd H. Stokes, Shelby E. Hassberger, Qaiser Chaudry, Andrew N. Young, May D. Wang:
Automatic batch-invariant color segmentation of histological cancer images. ISBI 2011: 657-660 - 2010
- [c8]Jaydeep K. Srimani, Po-Yen Wu, John H. Phan, May D. Wang:
A distributed system for fast alignment of next-generation sequencing data. BIBM Workshops 2010: 579-584
2000 – 2009
- 2009
- [c7]John H. Phan, Qiqin Yin-Goen, Andrew N. Young, May D. Wang:
Improving the Efficiency of Biomarker Identification Using Biological Knowledge. Pacific Symposium on Biocomputing 2009: 427-438 - 2008
- [c6]John H. Phan, Richard A. Moffitt, Andrea B. Barrett, May D. Wang:
Improving Microarray Sample Size Using Bootstrap Data Combination. IMSCCS 2008: 37-44 - 2007
- [c5]John H. Phan, May D. Wang:
Estimating Classification Error to Identify Biomarkers in Time Series Expression Data. BIBE 2007: 172-179 - [c4]John H. Phan, Richard A. Moffitt, Todd H. Stokes, May D. Wang:
Evolving Biological Behavior in Gene-Based Cellular Simulations. BIBE 2007: 509-516 - 2006
- [c3]John H. Phan, Andrew N. Young, May D. Wang:
Selecting Clinically-Driven Biomarkers for Cancer Nanotechnology. EMBC 2006: 3317-3320 - [c2]Todd H. Stokes, John H. Phan, Chang F. Quo, Shuming Nie, May D. Wang:
Bio-Nano-Informatics: An Integrated Information Management System for Personalized Oncology. EMBC 2006: 3325-3328 - 2004
- [c1]John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang:
Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System. CSB 2004: 474-475
Coauthor Index
aka: May Dongmei Wang
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