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ORCIDSanne Abeln
Person information
- affiliation: Free University of Amsterdam, Netherlands
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2020 – today
- 2024
[i5]Dea Gogishvili, Emmanuel Minois-Genin, Jan van Eck, Sanne Abeln
:
PatchProt: Hydrophobic patch prediction using protein foundation models. CoRR abs/2405.15928 (2024)- 2022
- [j23]Bas Stringer, Hans de Ferrante, Sanne Abeln, Jaap Heringa, K. Anton Feenstra, Reza Haydarlou:
PIPENN: protein interface prediction from sequence with an ensemble of neural nets. Bioinform. 38(8): 2111-2118 (2022) - [j22]Jan Verhoeff, Sanne Abeln, Juan J. Garcia-Vallejo:
INFLECT: an R-package for cytometry cluster evaluation using marker modality. BMC Bioinform. 23(1): 487 (2022) - [j21]Michael R. Crusoe, Sanne Abeln, Alexandru Iosup, Peter Amstutz, John Chilton, Nebojsa Tijanic, Hervé Ménager, Stian Soiland-Reyes, Bogdan Gavrilovic, Carole A. Goble, The Cwl Community:
Methods included. Commun. ACM 65(6): 54-63 (2022) - 2021
- [j20]Qingzhen Hou, Bas Stringer, Katharina Waury, Henriette Capel, Reza Haydarlou, Fuzhong Xue, Sanne Abeln, Jaap Heringa, K. Anton Feenstra:
SeRenDIP-CE: sequence-based interface prediction for conformational epitopes. Bioinform. 37(20): 3421-3427 (2021) - [i4]Michael R. Crusoe, Sanne Abeln, Alexandru Iosup, Peter Amstutz, John Chilton, Nebojsa Tijanic, Hervé Ménager, Stian Soiland-Reyes, Carole A. Goble:
Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language. CoRR abs/2105.07028 (2021) - 2020
- [j19]Juami Hermine Mariama van Gils, Erik van Dijk, Alessia Peduzzo, Alexander Hofmann, Nicola Vettore, Marie P. Schützmann, Georg Groth, Halima Mouhib, Daniel E. Otzen, Alexander K. Buell, Sanne Abeln:
The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2019
- [j18]Qingzhen Hou, Paul F. G. De Geest, Christian J. Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra:
SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions. Bioinform. 35(22): 4794-4796 (2019) - [j17]Maurits J. J. Dijkstra, Atze van der Ploeg, K. Anton Feenstra, Wan J. Fokkink, Sanne Abeln, Jaap Heringa:
Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit. Bioinform. 35(24): 5315-5317 (2019) - [r1]Sanne Abeln, K. Anton Feenstra, Jaap Heringa:
Protein Three-Dimensional Structure Prediction. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 497-511 - 2018
- [j16]K. Anton Feenstra, Sanne Abeln, Johan A. Westerhuis, Filipe Brancos dos Santos, Douwe Molenaar, Bas Teusink, Huub C. J. Hoefsloot, Jaap Heringa:
Training for translation between disciplines: a philosophy for life and data sciences curricula. Bioinform. 34(13): i4-i12 (2018) - [j15]Maurits J. J. Dijkstra, Punto Bawono, Sanne Abeln, K. Anton Feenstra, Wan J. Fokkink, Jaap Heringa:
Motif-Aware PRALINE: Improving the alignment of motif regions. PLoS Comput. Biol. 14(11) (2018) - 2017
- [i3]Chao Zhang, Jochem Bijlard, Christine Staiger, Serena A. Scollen, David van Enckevort, Youri Hoogstrate, Alexander Senf, Saskia D. Hiltemann, Susanna Repo, Wibo Pipping, Mariska Bierkens, Stefan Payralbe, Bas Stringer, Jaap Heringa, Andrew Stubbs, Luiz Olavo Bonino da Silva Santos, Jeroen Beliën, Ward Weistra, Rita Azevedo, Kees van Bochove, Gerrit Meijer, Jan-Willem Boiten, Jordi Rambla, Remond J. A. Fijneman, J. Dylan Spalding, Sanne Abeln:
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data. F1000Research 6: 1488- (2017) - 2016
- [j14]Ali May, Bernd W. Brandt, Mohammed El-Kebir, Gunnar W. Klau, Egija Zaura, Wim Crielaard, Jaap Heringa, Sanne Abeln:
metaModules identifies key functional subnetworks in microbiome-related disease. Bioinform. 32(11): 1678-1685 (2016) - [j13]Reza Haydarlou, Annika Jacobsen, Nicola Bonzanni, K. Anton Feenstra, Sanne Abeln, Jaap Heringa:
BioASF: a framework for automatically generating executable pathway models specified in BioPAX. Bioinform. 32(12): 60-69 (2016) - [j12]Jaap Heringa, Marcel J. T. Reinders, Sanne Abeln, Jeroen de Ridder:
ECCB 2016: The 15th European Conference on Computational Biology. Bioinform. 32(17): 389-392 (2016) - [c5]Bas Stringer, Albert Meroño-Peñuela, Sanne Abeln, Frank van Harmelen, Jaap Heringa:
SCRY: Extending SPARQL with Custom Data Processing Methods for the Life Sciences. SWAT4LS 2016 - [i2]Evert van den Broek, Stef van Lieshout, Christian Rausch, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J. A. Fijneman, Sanne Abeln:
GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes. F1000Research 5: 2340 (2016) - [i1]Youri Hoogstrate, Chao Zhang, Alexander Senf, Jochem Bijlard, Saskia D. Hiltemann, David van Enckevort, Susanna Repo, Jaap Heringa, Guido Jenster, Remond J. A. Fijneman, Jan-Willem Boiten, Gerrit A. Meijer, Andrew Stubbs, Jordi Rambla, J. Dylan Spalding, Sanne Abeln:
Integration of EGA secure data access into Galaxy. F1000Research 5: 2841 (2016) - 2015
- [j11]Ali May, Sanne Abeln, Mark J. Buijs, Jaap Heringa, Wim Crielaard, Bernd W. Brandt:
NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL. Nucleic Acids Res. 43(Webserver-Issue): W301-W305 (2015) - [j10]Erik van Dijk, Arlo Hoogeveen, Sanne Abeln:
The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures. PLoS Comput. Biol. 11(5) (2015) - [j9]Predrag Kukic, Arvind Kannan, Maurits J. J. Dijkstra, Sanne Abeln, Carlo Camilloni, Michele Vendruscolo:
Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations. PLoS Comput. Biol. 11(10) (2015) - [c4]Bas Stringer, Maurits J. J. Dijkstra, K. Anton Feenstra, Sanne Abeln, Jaap Heringa:
Explaining disease using big data: How valid is your pathway? HPCS 2015: 662-664 - [c3]Bas Stringer, Albert Meroño-Peñuela, Antonis Loizou, Sanne Abeln, Jaap Heringa:
To SCRY Linked Data: Extending SPARQL the Easy Way. Diversity++@ISWC 2015: 8-14 - [c2]Bas Stringer, Albert Meroño-Peñuela, Antonis Loizou, Sanne Abeln, Jaap Heringa:
SCRY: Enabling Quantitative Reasoning in SPARQL Queries. SWAT4LS 2015: 214-215 - 2014
- [j8]Ali May, René Pool, Erik van Dijk, Jochem Bijlard, Sanne Abeln, Jaap Heringa, K. Anton Feenstra:
Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins. Bioinform. 30(3): 326-334 (2014) - [j7]Ali May, Sanne Abeln, Wim Crielaard, Jaap Heringa, Bernd W. Brandt:
Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations. Bioinform. 30(11): 1530-1538 (2014) - 2013
- [j6]Sanne Abeln, Douwe Molenaar, K. Anton Feenstra, Huub C. J. Hoefsloot, Bas Teusink, Jaap Heringa:
Bioinformatics and Systems Biology: bridging the gap between heterogeneous student backgrounds. Briefings Bioinform. 14(5): 589-598 (2013) - [j5]Hannah Edwards, Sanne Abeln, Charlotte M. Deane:
Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies. PLoS Comput. Biol. 9(11) (2013) - 2012
- [j4]Marc J. Bonder, Sanne Abeln, Egija Zaura, Bernd W. Brandt:
Comparing clustering and pre-processing in taxonomy analysis. Bioinform. 28(22): 2891-2897 (2012)
2000 – 2009
- 2008
- [j3]Sanne Abeln, Daan Frenkel:
Disordered Flanks Prevent Peptide Aggregation. PLoS Comput. Biol. 4(12) (2008) - 2007
- [j2]Sanne Abeln, Charlotte M. Deane:
Linking evolution of protein structures through fragments. BMC Syst. Biol. 1(S-1): S12 (2007) - [j1]Sanne Abeln, Carlo Teubner, Charlotte M. Deane:
Using Phylogeny to Improve Genome-Wide Distant Homology Recognition. PLoS Comput. Biol. 3(1) (2007) - 2005
- [c1]Henry F. Winstanley, Sanne Abeln, Charlotte M. Deane:
How old is your fold? ISMB (Supplement of Bioinformatics) 2005: 449-458
Coauthor Index
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last updated on 2024-10-07 21:22 CEST by the dblp team
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