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2020 – today
- 2024
[c43]Andrea Licciardi
, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Laura La Paglia:
A Deep Learning Multi-omics Framework to Combine Microbiome and Metabolome Profiles for Disease Classification. ICANN (8) 2024: 3-14- 2023
- [j21]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Salvatore Gaglio, Alfonso Urso:
GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data. Briefings Bioinform. 24(6) (2023) - 2022
- [c42]Gianmarco Coppola, Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Alfonso Urso, Salvatore Gaglio:
A Gene Ontology-Driven Wide and Deep Learning Architecture for Cell-Type Classification from Single-Cell RNA-seq Data. EANN 2022: 323-335 - 2020
- [j20]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions. BMC Bioinform. 21-S(8): 199 (2020) - [j19]Alfonso Urso, Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Giosuè Lo Bosco, Riccardo Rizzo:
BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics. BMC Bioinform. 21-S(8): 363 (2020)
2010 – 2019
- 2019
- [j18]Paolo Romano, Arnaud Céol, Andreas Dräger, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso:
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinform. 20-S(4): 125:1-125:9 (2019) - [j17]Valeria Boscaino, Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
MiRNA therapeutics based on logic circuits of biological pathways. BMC Bioinform. 20-S(9): 344:1-344:22 (2019) - [r2]Alfonso Urso, Antonino Fiannaca, Massimo La Rosa, Valentina Ravì, Riccardo Rizzo:
Data Mining: Classification and Prediction. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 384-402 - [r1]Alfonso Urso, Antonino Fiannaca, Massimo La Rosa, Valentina Ravì, Riccardo Rizzo:
Data Mining: Prediction Methods. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 413-430 - 2018
- [j16]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Giosuè Lo Bosco, Giovanni Renda, Riccardo Rizzo, Salvatore Gaglio, Alfonso Urso:
Deep learning models for bacteria taxonomic classification of metagenomic data. BMC Bioinform. 19-S(7): 61-76 (2018) - [j15]Antonio Messina, Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Alfonso Urso:
BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources. BMC Syst. Biol. 12(5): 75-89 (2018) - [c41]Giosuè Lo Bosco, Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
Variable Ranking Feature Selection for the Identification of Nucleosome Related Sequences. ADBIS (Short Papers and Workshops) 2018: 314-324 - [c40]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Giosuè Lo Bosco, Riccardo Rizzo, Alfonso Urso:
Identification of Key miRNAs in Regulation of PPI Networks. CIBB 2018: 107-117 - 2017
- [j14]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso:
nRC: non-coding RNA Classifier based on structural features. BioData Min. 10(1): 27:1-27:18 (2017) - [c39]Antonio Messina, Haikal Pribadi, Jo Stichbury, Michelangelo Bucci, Szymon Klarman, Alfonso Urso:
BioGrakn: A Knowledge Graph-Based Semantic Database for Biomedical Sciences. CISIS 2017: 299-309 - [c38]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Antonio Messina, Riccardo Rizzo, Dario Stabile, Alfonso Urso:
Gremlin Language for Querying the BiographDB Integrated Biological Database. IWBBIO (1) 2017: 303-313 - [i1]Gustavo C. Martins, Alfonso Urso, André Mansano, Yao Liu, Wouter A. Serdijn:
Energy-Efficient Low-Power Circuits for Wireless Energy and Data Transfer in IoT Sensor Nodes. CoRR abs/1704.08910 (2017) - 2016
- [j13]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso:
MiRNATIP: a SOM-based miRNA-target interactions predictor. BMC Bioinform. 17(S-11): 321 (2016) - [c37]Antonio Messina, Pietro Storniolo, Alfonso Urso:
Keep It Simple, Fast and Scalable: A Multi-model NoSQL DBMS as an (eb) XML-over-SOAP Service. AINA Workshops 2016: 220-225 - [c36]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Antonio Messina, Riccardo Rizzo, Alfonso Urso:
A Problem-Driven Approach for Building a Bioinformatics GraphDB. CIBB 2016: 134-144 - [c35]Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
Classification Experiments of DNA Sequences by Using a Deep Neural Network and Chaos Game Representation. CompSysTech 2016: 222-228 - [c34]Antonio Messina, Pietro Storniolo, Alfonso Urso:
EXPO: A Modern NoSQL-based ebXML Registry for Health Information Systems. CompSysTech 2016: 253-260 - [c33]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Antonio Messina, Pietro Storniolo, Alfonso Urso:
Integrated DB for Bioinformatics: A Case Study on Analysis of Functional Effect of MiRNA SNPs in Cancer. ITBAM 2016: 214-222 - [c32]Antonio Messina, Riccardo Rizzo, Pietro Storniolo, Mario Tripiciano, Alfonso Urso:
The Database-is-the-Service Pattern for Microservice Architectures. ITBAM 2016: 223-233 - [c31]Giosuè Lo Bosco, Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
A Deep Learning Model for Epigenomic Studies. SITIS 2016: 688-692 - 2015
- [j12]Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network. Artif. Intell. Medicine 64(3): 173-184 (2015) - [j11]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso:
Analysis of miRNA expression profiles in breast cancer using biclustering. BMC Bioinform. 16(S-4): S7 (2015) - [j10]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
Probabilistic topic modeling for the analysis and classification of genomic sequences. BMC Bioinform. 16(S-6): S2 (2015) - [c30]Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
A Deep Learning Approach to DNA Sequence Classification. CIBB 2015: 129-140 - 2014
- [j9]Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
An expert system hybrid architecture to support experiment management. Expert Syst. Appl. 41(4): 1609-1621 (2014) - [j8]Antonino Fiannaca, Massimo La Rosa, Giuseppe Di Fatta, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
The BioDICE Taverna plugin for clustering and visualization of biological data: a workflow for molecular compounds exploration. J. Cheminformatics 6(1): 24 (2014) - [c29]Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
The General Regression Neural Network to Classify Barcode and mini-barcode DNA. CIBB 2014: 142-155 - [c28]Antonino Fiannaca, Massimo La Rosa, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
Knowledge organization for modelling workflows in Taverna environment. MED 2014: 972-977 - 2013
- [j7]Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Riccardo Rizzo, Salvatore Gaglio:
A knowledge-based decision support system in bioinformatics: an application to protein complex extraction. BMC Bioinform. 14(S-1): S5 (2013) - [j6]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
Alignment-free analysis of barcode sequences by means of compression-based methods. BMC Bioinform. 14(S-7): S4 (2013) - [j5]Antonino Fiannaca, Giuseppe Di Fatta, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
Simulated annealing technique for fast learning of SOM networks. Neural Comput. Appl. 22(5): 889-899 (2013) - [c27]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
Genomic Sequence Classification Using Probabilistic Topic Modeling. CIBB 2013: 49-61 - [c26]Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
Analysis of DNA Barcode Sequences Using Neural Gas and Spectral Representation. EANN (2) 2013: 212-221 - 2012
- [c25]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
A Study of Compression-Based Methods for the Analysis of Barcode Sequences. CIBB 2012: 105-116 - [c24]Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
An Intelligent System for Building Bioinformatics Workflows. CISIS 2012: 212-218 - 2011
- [j4]Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
Soft Topographic Maps for Clustering and Classifying Bacteria Using Housekeeping Genes. Adv. Artif. Neural Syst. 2011: 617427:1-617427:8 (2011) - 2010
- [c23]Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Daniele Peri, Riccardo Rizzo, Alfonso Urso:
A Knowledge Based Decision Support System for Bioinformatics and System Biology. CIBB 2010: 215-228 - [c22]José Flich, Alfonso Urso, Ulrich Brüning, Giuseppe Di Fatta:
High Performance Networks. Euro-Par (2) 2010: 412
2000 – 2009
- 2009
- [j3]Massimo La Rosa, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
Normalised compression distance and evolutionary distance of genomic sequences: comparison of clustering results. Int. J. Knowl. Eng. Soft Data Paradigms 1(4): 345-362 (2009) - [c21]Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Daniele Peri, Riccardo Rizzo, Alfonso Urso:
A Proposed Knowledge Based Approach for Solving Proteomics Issues. CIBB 2009: 304-318 - [c20]Riccardo Rizzo, Alfonso Urso:
Identifying Clusters Using Growing Neural Gas: First Results. ICANN (1) 2009: 536-545 - 2008
- [c19]Claudio Mirabello, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
Clustering Bacteria Species Using Neural Gas: Preliminary Study. CIBB 2008: 167-176 - [c18]Antonino Fiannaca, Giuseppe Di Fatta, Alfonso Urso, Riccardo Rizzo, Salvatore Gaglio:
A New Linear Initialization in SOM for Biomolecular Data. CIBB 2008: 177-187 - [c17]Antonino Fiannaca, Giuseppe Di Fatta, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
Clustering Quality and Topology Preservation in Fast Learning SOMs. ICANN (1) 2008: 583-592 - [c16]Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
A New SOM Initialization Algorithm for Nonvectorial Data. KES (1) 2008: 41-48 - [c15]Massimo La Rosa, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
Comparison of Genomic Sequences Clustering Using Normalized Compression Distance and Evolutionary Distance. KES (3) 2008: 740-746 - 2007
- [c14]Antonino Fiannaca, Giuseppe Di Fatta, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
Improved SOM Learning Using Simulated Annealing. ICANN (1) 2007: 279-288 - [c13]Massimo La Rosa, Giuseppe Di Fatta, Salvatore Gaglio, Giovanni M. Giammanco, Riccardo Rizzo, Alfonso Urso:
Soft Topographic Map for Clustering and Classification of Bacteria. IDA 2007: 332-343 - [c12]Antonino Fiannaca, Giuseppe Di Fatta, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
Fast Training of Self Organizing Maps for the Visual Exploration of Molecular Compounds. IJCNN 2007: 2776-2781 - [c11]Giovanni Aiello, Marco Alessi, Massimo Cossentino, Pietro Storniolo, Alfonso Urso:
DNK-WSD: A Distributed Approach for Knowledge Discovery in Peer to Peer Networks. PDP 2007: 325-332 - 2006
- [j2]Salvatore Gaglio, Luca Gatani, Giuseppe Lo Re, Alfonso Urso:
A Logical Architecture for Active Network Management. J. Netw. Syst. Manag. 14(1): 127-146 (2006) - [c10]Giuseppe Di Fatta, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso, Michael R. Berthold, Salvatore Gaglio:
Context-Aware Visual Exploration of Molecular Datab. ICDM Workshops 2006: 136-141 - [c9]Giovanni Aiello, Marco Alessi, Massimo Cossentino, Alfonso Urso, Giuseppe Vella:
RTDWD: Real-Time Distributed Wideband-Delphi for User Stories Estimation. RISE 2006: 35-50 - 2005
- [c8]Alessandra De Paola, S. Fiduccia, Salvatore Gaglio, Luca Gatani, Giuseppe Lo Re, A. Pizzitola, Marco Ortolani, Pietro Storniolo, Alfonso Urso:
Rule Based Reasoning for Network Management. CAMP 2005: 25-30 - [c7]Marco Ortolani, Luca Gatani, Giuseppe Lo Re, Alfonso Urso, Salvatore Gaglio:
An efficient retransmission strategy for data gathering in wireless sensor networks. ETFA 2005 - 2004
- [c6]Giuseppe Lo Presti, Giuseppe Lo Re, Pietro Storniolo, Alfonso Urso:
A Grid Enabled Parallel Hybrid Genetic Algorithm for SPN. International Conference on Computational Science 2004: 156-163 - [c5]Salvatore Gaglio, Luca Gatani, Giuseppe Lo Re, Alfonso Urso:
Exploiting deductive processes for automated network management. ICON 2004: 221-225 - [c4]Salvatore Gaglio, Luca Gatani, Giuseppe Lo Presti, Giuseppe Lo Re, Alfonso Urso:
A Dynamic Reasoning Architecture for Computer Network Management. ICTAI 2004: 779-781 - [c3]Giovanni Aiello, Salvatore Gaglio, Giuseppe Lo Re, Pietro Storniolo, Alfonso Urso:
The Random Neural Network Model for the On-Line Multicast Problem. WIRN 2004: 157-164 - 2003
- [j1]Giuseppe Di Fatta, Frank Hoffmann, Giuseppe Lo Re, Alfonso Urso:
A genetic algorithm for the design of a fuzzy controller for active queue management. IEEE Trans. Syst. Man Cybern. Part C 33(3): 313-324 (2003) - [c2]Giuseppe Di Fatta, Giuseppe Lo Re, Alfonso Urso:
Parallel Genetic Algorithms for the Tuning of a Fuzzy AQM Controller. ICCSA (1) 2003: 417-426 - 2002
- [c1]Giuseppe Di Fatta, Giuseppe Lo Re, Alfonso Urso:
A Fuzzy Approach for the Network Congestion Problem. International Conference on Computational Science (1) 2002: 286-295
Coauthor Index
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