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Jeffrey T. Leek
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2020 – today
- 2024
- [i10]Kentaro Hoffman, Stephen Salerno, Awan Afiaz, Jeffrey T. Leek, Tyler H. McCormick:
Do We Really Even Need Data? CoRR abs/2401.08702 (2024) - [i9]Shuxian Fan, Adam Visokay, Kentaro Hoffman, Stephen Salerno, Li Liu, Jeffrey T. Leek, Tyler H. McCormick:
From Narratives to Numbers: Valid Inference Using Language Model Predictions from Verbal Autopsy Narratives. CoRR abs/2404.02438 (2024) - 2023
- [i8]Candace Savonen, Carrie Wright, Ava M. Hoffman, Elizabeth M. Humphries, Katherine E. L. Cox, Frederick J. Tan, Jeffrey T. Leek:
Motivation, inclusivity, and realism should drive data science education. CoRR abs/2305.06213 (2023) - [i7]Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes
, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss
, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright:
Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? CoRR abs/2306.03255 (2023) - 2022
- [i6]Rosa Alcazar, Maria Alvarez, Rachel Arnold, Mentewab Ayalew, Lyle G. Best, Michael C. Campbell, Kamal Chowdhury, Katherine E. L. Cox, Christina Daulton, Youping Deng, Carla Easter, Karla Fuller, Shazia Tabassum Hakim, Ava M. Hoffman, Natalie Kucher, Andrew Lee, Joslynn Lee, Jeffrey T. Leek, Robert Meller, Loyda B. Méndez, Miguel P. Méndez-González, Stephen Mosher, Michele Nishiguchi, Siddharth Pratap, Tiffany Rolle, Sourav Roy, Rachel Saidi, Michael C. Schatz, Shurjo Sen, James Sniezek, Edu Suarez Martinez, Frederick Tan, Jennifer Vessio, Karriem Watson, Wendy Westbroek, Joseph Wilcox, Xianfa Xie:
Diversifying the Genomic Data Science Research Community. CoRR abs/2201.08443 (2022) - [i5]Candace Savonen, Carrie Wright, Ava M. Hoffman, John Muschelli, Katherine E. L. Cox, Frederick J. Tan, Jeffrey T. Leek:
Open-source Tools for Training Resources - OTTR. CoRR abs/2203.07083 (2022) - 2021
- [i4]Siruo Wang, Leah R. Jager, Kai Kammers, Aboozar Hadavand, Jeffrey T. Leek:
Linking open-source code commits and MOOC grades to evaluate massive online open peer review. CoRR abs/2104.12555 (2021) - 2020
- [j23]Lucy D'Agostino McGowan, Sean Kross
, Jeffrey T. Leek:
Tools for Analyzing R Code the Tidy Way. R J. 12(1): 226 (2020) - [j22]Sean Kross
, Jeffrey T. Leek, John Muschelli:
ari: The Automated R Instructor. R J. 12(1): 258 (2020) - [i3]Sean Kross, Jeffrey T. Leek, John Muschelli:
Ari: The Automated R Instructor. CoRR abs/2007.13477 (2020)
2010 – 2019
- 2019
- [j21]Aboozar Hadavand
, John Muschelli, Jeffrey T. Leek:
Analysis of Student Behavior Using the R Package crsra. J. Learn. Anal. 6(2) (2019) - 2017
- [j20]Abhinav Nellore
, Leonardo Collado-Torres, Andrew E. Jaffe
, José Alquicira-Hernández
, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead
:
Rail-RNA: scalable analysis of RNA-seq splicing and coverage. Bioinform. 33(24): 4033-4040 (2017) - 2016
- [j19]Abhinav Nellore
, Christopher Wilks, Kasper D. Hansen, Jeffrey T. Leek, Ben Langmead
:
Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. Bioinform. 32(16): 2551-2553 (2016) - [j18]Solaiappan Manimaran, Heather Marie Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush
, Benjamin Haibe-Kains
, Héctor Corrada Bravo, W. Evan Johnson
:
BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinform. 32(24): 3836-3838 (2016) - [j17]Andrew E. Jaffe
, Thomas Hyde, Joel Kleinman, Daniel R. Weinberger, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni:
Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 17: 302 (2016) - 2015
- [j16]Prasad Patil, Pierre-Olivier Bachant-Winner, Benjamin Haibe-Kains
, Jeffrey T. Leek
:
Test set bias affects reproducibility of gene signatures. Bioinform. 31(14): 2318-2323 (2015) - [j15]Alyssa C. Frazee, Andrew E. Jaffe
, Ben Langmead
, Jeffrey T. Leek
:
Polyester: simulating RNA-seq datasets with differential transcript expression. Bioinform. 31(17): 2778-2784 (2015) - [j14]Andrew E. Jaffe
, Thomas Hyde, Joel Kleinman, Daniel Weinbergern, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek
, Carlo Colantuoni
:
Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 16: 372:1-372:10 (2015) - [j13]Jeffrey T. Leek
, Roger D. Peng:
Statistics: P values are just the tip of the iceberg. Nat. 520(7549): 612 (2015) - [j12]Prasad Patil, Jeffrey T. Leek
:
Discussion of "visualizing statistical models: Removing the blindfold". Stat. Anal. Data Min. 8(4): 240-241 (2015) - [i2]Jeffrey T. Leek, Roger D. Peng:
Reproducible Research Can Still Be Wrong: Adopting a Prevention Approach. CoRR abs/1502.03169 (2015) - [i1]Leonardo Collado-Torres
, Andrew E. Jaffe
, Jeffrey T. Leek
:
regionReport: Interactive reports for region-based analyses. F1000Research 4: 105 (2015) - 2014
- [j11]Hilary S. Parker, Jeffrey T. Leek, Alexander V. Favorov, Michael Considine, Xiaoxin Xia, Sameer Chavan
, Christine H. Chung, Elana J. Fertig
:
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction. Bioinform. 30(19): 2757-2763 (2014) - 2013
- [j10]Andrew E. Jaffe
, John D. Storey
, Hongkai Ji, Jeffrey T. Leek
:
Gene set bagging for estimating the probability a statistically significant result will replicate. BMC Bioinform. 14: 360 (2013) - [j9]Mehdi Pirooznia
, Fayaz Seifuddin, Fernando S. Goes, Jeffrey T. Leek
, Peter P. Zandi:
SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies. Source Code Biol. Medicine 8: 8 (2013) - 2012
- [j8]Jeffrey T. Leek, W. Evan Johnson
, Hilary S. Parker, Andrew E. Jaffe
, John D. Storey
:
The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinform. 28(6): 882-883 (2012) - [j7]Jeffrey T. Leek
, Margaret Taub, Jason L. Rasgon
:
A statistical approach to selecting and confirming validation targets in -omics experiments. BMC Bioinform. 13: 150 (2012) - [j6]Héctor Corrada Bravo
, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek
:
Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC Bioinform. 13: 272 (2012) - 2011
- [j5]Sangsoon Woo, Jeffrey T. Leek
, John D. Storey
:
A computationally efficient modular optimal discovery procedure. Bioinform. 27(4): 509-515 (2011) - [j4]Alyssa C. Frazee, Ben Langmead
, Jeffrey T. Leek
:
ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets. BMC Bioinform. 12: 449 (2011)
2000 – 2009
- 2009
- [j3]Jeffrey T. Leek:
The tspair package for finding top scoring pair classifiers in R. Bioinform. 25(9): 1203-1204 (2009) - 2006
- [j2]Jeffrey T. Leek, Eva Monsen, Alan R. Dabney, John D. Storey
:
EDGE: extraction and analysis of differential gene expression. Bioinform. 22(4): 507-508 (2006) - [j1]Jeffrey T. Leek, Eva Monsen, Alan R. Dabney, John D. Storey:
EDGE: extraction and analysis of differential gene expression. Bioinform. 22(11): 1412 (2006)
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last updated on 2024-05-14 20:27 CEST by the dblp team
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