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2020 – today
- 2024
[j31]Laha Ale
, Robert Gentleman, Teresa Filshtein Sonmez, Deepayan Sarkar, Christopher Endres:
nhanesA: achieving transparency and reproducibility in NHANES research. Database J. Biol. Databases Curation 2024 (2024)- [i2]Rafael S. Gonçalves, Jason Payne, Amelia L. M. Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman:
The text2term tool to map free-text descriptions of biomedical terms to ontologies. CoRR abs/2407.02626 (2024) - [i1]Amelia L. M. Tan, Rafael S. Gonçalves, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane:
Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. CoRR abs/2407.08874 (2024) - 2023
- [j30]Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman:
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinform. 39(3) (2023)
2010 – 2019
- 2017
- [j29]Michael F. Lawrence, Robert Gentleman:
VariantTools: an extensible framework for developing and testing variant callers. Bioinform. 33(20): 3311-3313 (2017) - 2014
- [j28]Thomas Sandmann, Sarah K. Kummerfeld, Robert Gentleman, Richard Bourgon:
gCMAP: user-friendly connectivity mapping with R. Bioinform. 30(1): 127-128 (2014) - [j27]Zizhen Yao, Kyle L. MacQuarrie, Abraham P. Fong, Stephen J. Tapscott, Walter L. Ruzzo, Robert Gentleman:
Discriminative motif analysis of high-throughput dataset. Bioinform. 30(6): 775-783 (2014) - [c4]Oleg Mayba, Florian Gnad, Michael Peyton, Fan Zhang, Kimberly Walter, Pan Du, Melanie A. Huntley, Zhaoshi Jiang, Jinfeng Liu, Peter M. Haverty, Robert Gentleman, Ruiqiang Li, John D. Minna, Yingrui Li, David S. Shames, Zemin Zhang:
Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach. Pacific Symposium on Biocomputing 2014: 75-86 - 2013
- [j26]Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey:
Software for Computing and Annotating Genomic Ranges. PLoS Comput. Biol. 9(8) (2013) - 2011
- [j25]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j24]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - [c3]Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman:
Workshop Introduction. Pacific Symposium on Biocomputing 2011: 364-368 - [r1]Robert Gentleman, Wolfgang Huber, Vincent J. Carey:
R Language. International Encyclopedia of Statistical Science 2011: 1159-1161
2000 – 2009
- 2009
- [j23]Kyongryun Lee, Florian Hahne, Deepayan Sarkar, Robert Gentleman:
iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor. Adv. Bioinformatics 2009: 103839:1-103839:3 (2009) - [j22]Alain C. Vandal, Marston D. E. Conder, Robert Gentleman:
Minimal Covers of Maximal Cliques for Interval Graphs. Ars Comb. 92 (2009) - [j21]David Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette:
DATABASE: A new forum for biological databases and curation. Database J. Biol. Databases Curation 2009 (2009) - [j20]Audrey Kauffmann, Robert Gentleman, Wolfgang Huber:
arrayQualityMetrics - a bioconductor package for quality assessment of microarray data. Bioinform. 25(3): 415-416 (2009) - [j19]Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby:
Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. Bioinform. 25(11): 1447-1448 (2009) - [j18]Michael F. Lawrence, Robert Gentleman, Vincent J. Carey:
rtracklayer: an R package for interfacing with genome browsers. Bioinform. 25(14): 1841-1842 (2009) - [j17]Martin Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman:
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinform. 25(19): 2607-2608 (2009) - [j16]Florian Hahne, Nolwenn LeMeur, Ryan Remy Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman:
flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinform. 10 (2009) - [j15]Armand Bankhead, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Marc Ferrer, Robert Gentleman, Carol Rohl:
Knowledge based identification of essential signaling from genome-scale siRNA experiments. BMC Syst. Biol. 3: 80 (2009) - [c2]Vincent J. Carey, Robert Gentleman:
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor. Pacific Symposium on Biocomputing 2009: 380-390 - 2008
- [j14]Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman:
Estimating node degree in bait-prey graphs. Bioinform. 24(2): 218-224 (2008) - [j13]Deepayan Sarkar, Nolwenn Le Meur, Robert Gentleman:
Using flowViz to visualize flow cytometry data. Bioinform. 24(6): 878-879 (2008) - [j12]Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber:
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. Bioinform. 24(8): 1100-1101 (2008) - [j11]Assaf P. Oron, Zhen Jiang, Robert Gentleman:
Gene set enrichment analysis using linear models and diagnostics. Bioinform. 24(22): 2586-2591 (2008) - [c1]Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy:
SGDI: System for Genomic Data Integration. Pacific Symposium on Biocomputing 2008: 141-152 - 2007
- [j10]Seth Falcon, Robert Gentleman:
Using GOstats to test gene lists for GO term association. Bioinform. 23(2): 257-258 (2007) - [j9]Zhen Jiang, Robert Gentleman:
Extensions to gene set enrichment. Bioinform. 23(3): 306-313 (2007) - [j8]Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman:
GGtools: analysis of genetics of gene expression in bioconductor. Bioinform. 23(4): 522-523 (2007) - [j7]Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman:
Graphs in molecular biology. BMC Bioinform. 8(S-6) (2007) - 2005
- [j6]Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman:
Network structures and algorithms in Bioconductor. Bioinform. 21(1): 135-136 (2005) - [j5]Denise Scholtens, Marc Vidal, Robert Gentleman:
Local modeling of global interactome networks. Bioinform. 21(17): 3548-3557 (2005) - 2004
- [j4]Wolfgang Huber, Robert Gentleman:
matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements. Bioinform. 20(10): 1651-1652 (2004) - [j3]Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman:
A graph-theoretic approach to testing associations between disparate sources of functional genomics data. Bioinform. 20(18): 3353-3362 (2004) - 2003
- [j2]Jianhua Zhang, Vincent J. Carey, Robert Gentleman:
An extensible application for assembling annotation for genomic data. Bioinform. 19(1): 155-156 (2003)
1990 – 1999
- 1996
- [j1]Nozer D. Singpurwalla, Robert Gentleman, Willem J. Heiser, Dibyen Majumdar:
Book reviews. Stat. Comput. 6(4): 387-391 (1996)
Coauthor Index
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