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ORCIDCristian Coarfa
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2010 – 2019
- 2015
[j9]Roadmap Epigenomics Consortium, Anshul Kundaje
, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis:
Integrative analysis of 111 reference human epigenomes Open. Nat. 518(7539): 317-330 (2015)- 2014
- [j8]Cristian Coarfa, Christina Pichot, Andrew R. Jackson, Arpit Tandon, Viren Amin, Sriram Raghuraman, Sameer Paithankar, Adrian V. Lee, Sean E. McGuire, Aleksandar Milosavljevic:
Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools. BMC Bioinform. 15(S-7): S2 (2014) - 2012
- [j7]Danny Challis, Jin Yu, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu:
An integrative variant analysis suite for whole exome next-generation sequencing data. BMC Bioinform. 13: 8 (2012) - [j6]Kevin Riehle, Cristian Coarfa, Andrew R. Jackson, Jun Ma, Arpit Tandon, Sameer Paithankar, Sriram Raghuraman, Toni-Ann Mistretta, Delphine Saulnier, Sabeen Raza, Maria Diaz, Robert Shulman, Kjersti Aagaard, James Versalovic, Aleksandar Milosavljevic:
The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences. BMC Bioinform. 13(S-13): S11 (2012) - 2011
- [c11]Uday S. Evani, Danny Challis, Jin Yu, Andrew R. Jackson, Sameer Paithankar, Matthew N. Bainbridge, Cristian Coarfa, Aleksandar Milosavljevic, Fuli Yu:
Enabling Atlas2 personal genome analysis on the cloud. GENSiPS 2011: 117-120 - 2010
- [j5]Cristian Coarfa, Fuli Yu, Christopher A. Miller, Zuozhou Chen, R. Alan Harris, Aleksandar Milosavljevic:
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing. BMC Bioinform. 11: 572 (2010)
2000 – 2009
- 2008
- [c10]Cristian Coarfa, Aleksandar Milosavljevic:
Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies. Pacific Symposium on Biocomputing 2008: 102-113 - 2007
- [c9]Cristian Coarfa, John M. Mellor-Crummey, Nathan Froyd, Yuri Dotsenko:
Scalability analysis of SPMD codes using expectations. ICS 2007: 13-22 - 2006
- [j4]Yuri Dotsenko, Cristian Coarfa, Luay Nakhleh, John M. Mellor-Crummey, Usman Roshan:
PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. Int. J. Bioinform. Res. Appl. 2(4): 407-419 (2006) - [j3]Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey:
Experiences with Sweep3D implementations in Co-array Fortran. J. Supercomput. 36(2): 101-121 (2006) - [j2]Cristian Coarfa, Peter Druschel, Dan S. Wallach:
Performance analysis of TLS Web servers. ACM Trans. Comput. Syst. 24(1): 39-69 (2006) - 2005
- [c8]Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan:
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction. ICPADS (2) 2005: 346-350 - [c7]Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, François Cantonnet, Tarek A. El-Ghazawi, Ashrujit Mohanti, Yiyi Yao, Daniel G. Chavarría-Miranda:
An evaluation of global address space languages: co-array fortran and unified parallel C. PPoPP 2005: 36-47 - 2004
- [c6]Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey:
A Multi-Platform Co-Array Fortran Compiler. IEEE PACT 2004: 29-40 - [c5]Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey, Daniel G. Chavarría-Miranda:
Experiences with Co-array Fortran on Hardware Shared Memory Platforms. LCPC 2004: 332-347 - 2003
- [j1]Cristian Coarfa, Demetrios D. Demopoulos, Alfonso San Miguel Aguirre, Devika Subramanian, Moshe Y. Vardi:
Random 3-SAT: The Plot Thickens. Constraints An Int. J. 8(3): 243-261 (2003) - [c4]Cristian Coarfa, Yuri Dotsenko, Jason Eckhardt, John M. Mellor-Crummey:
Co-array Fortran Performance and Potential: An NPB Experimental Study. LCPC 2003: 177-193 - [c3]Cristian Coarfa, Yuri Dotsenko:
An emerging co-array fortran compiler. PPoPP 2003: 2 - 2002
- [c2]Cristian Coarfa, Peter Druschel, Dan S. Wallach:
Performance Analysis of TLS Web Servers. NDSS 2002 - 2000
- [c1]Cristian Coarfa, Demetrios D. Demopoulos, Alfonso San Miguel Aguirre, Devika Subramanian, Moshe Y. Vardi:
Random 3-SAT: The Plot Thickens. CP 2000: 143-159
Coauthor Index
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