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ORCIDAugustin Luna
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2020 – today
- 2024
[i3]Yoshitaka Inoue, Hunmin Lee, Tianfan Fu, Augustin Luna:
drGAT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network. CoRR abs/2405.08979 (2024)- 2023
- [j22]Adrien Rougny
, Irina Balaur, Augustin Luna, Alexander Mazein:
StonPy: a tool to parse and query collections of SBGN maps in a graph database. Bioinform. 39(3) (2023) - 2021
- [j21]Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers:
Synthetic biology open language visual (SBOL Visual) version 2.3. J. Integr. Bioinform. 18(3) (2021) - [j20]Augustin Luna, Fathi Elloumi, Sudhir Varma, Yanghsin Wang, Vinodh N. Rajapakse, Mirit I. Aladjem, Jacques Robert, Chris Sander, Yves Pommier, William C. Reinhold:
CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics. Nucleic Acids Res. 49(Database-Issue): D1083-D1093 (2021) - [j19]Özgün Babur, Augustin Luna, Anil Korkut, Funda Durupinar, Metin Can Siper, Ugur Dogrusoz, Alvaro Sebastian Vaca Jacome, Ryan Peckner, Karen E. Christianson, Jacob D. Jaffe, Paul T. Spellman, Joseph E. Aslan, Chris Sander, Emek Demir:
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge. Patterns 2(6): 100257 (2021) - 2020
- [j18]Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers:
Synthetic biology open language visual (SBOL visual) version 2.2. J. Integr. Bioinform. 17(2-3) (2020) - [j17]Frank T. Bergmann, Tobias Czauderna, Ugur Dogrusoz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov, Augustin Luna:
Systems biology graphical notation markup language (SBGNML) version 0.3. J. Integr. Bioinform. 17(2-3) (2020) - [j16]Igor V. Rodchenkov, Ozgun Babur, Augustin Luna, Bülent Arman Aksoy, Jeffrey V. Wong, Dylan Fong, Max Franz, Metin Can Siper, Manfred Cheung, Michael Wrana, Harsh Mistry, Logan Mosier, Jonah Dlin, Qizhi Wen, Caitlin O'Callaghan, Wanxin Li, Geoffrey Elder, Peter T. Smith, Christian Dallago, Ethan Cerami, Benjamin Gross, Ugur Dogrusoz, Emek Demir, Gary D. Bader, Chris Sander:
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data. Nucleic Acids Res. 48(Database-Issue): D489-D497 (2020) - [i2]Roc Reguant, Yevgeniy Antipin, Robert P. Sheridan, Christian Dallago, Drew Diamantoukos, Augustin Luna, Chris Sander, Nicholas Paul Gauthier:
AlignmentViewer: Sequence Analysis of Large Protein Families. F1000Research 9: 213 (2020)
2010 – 2019
- 2019
- [j15]Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. J. Integr. Bioinform. 16(2) (2019) - [j14]Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019) - 2018
- [j13]Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J. Integr. Bioinform. 15(1) (2018) - 2016
- [j12]Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier:
The digital revolution in phenotyping. Briefings Bioinform. 17(5): 819-830 (2016) - [j11]Augustin Luna, Özgün Babur, Bülent Arman Aksoy, Emek Demir, Chris Sander:
PaxtoolsR: pathway analysis in R using Pathway Commons. Bioinform. 32(8): 1262-1264 (2016) - [j10]Augustin Luna, Vinodh N. Rajapakse, Fabricio G. Sousa, Jianjiong Gao, Nikolaus Schultz, Sudhir Varma, William C. Reinhold, Chris Sander, Yves Pommier:
rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R. Bioinform. 32(8): 1272-1274 (2016) - 2015
- [j9]Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger:
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . J. Integr. Bioinform. 12(2) (2015) - [j8]Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger:
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. J. Integr. Bioinform. 12(2) (2015) - [j7]Augustin Luna, Geoffrey B. McFadden, Mirit I. Aladjem, Kurt W. Kohn:
Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response. PLoS Comput. Biol. 11(5) (2015) - 2014
- [i1]Mine Edes, Can C. Özturan, Türkan Haliloglu, Augustin Luna, Ruth Nussinov:
MIMTool: A Tool for Drawing Molecular Interaction Maps. CoRR abs/1407.2073 (2014) - 2013
- [b1]Augustin Luna:
Formalization of molecular interaction maps in systems biology; Application to simulations of the relationship between DNA damage response and circadian rhythms. Boston University, USA, 2013 - [j6]Jake Y. Fried, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna:
PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways. Bioinform. 29(11): 1465-1466 (2013) - 2012
- [j5]Kumar Chandan, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna:
PathVisio-Validator: a rule-based validation plugin for graphical pathway notations. Bioinform. 28(6): 889-890 (2012) - [j4]Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber:
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28(15): 2016-2021 (2012) - 2011
- [j3]Augustin Luna, Margot Sunshine, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn:
PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs). Bioinform. 27(15): 2165-2166 (2011) - [j2]Augustin Luna, Evrim I. Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov, Mirit I. Aladjem, Kurt W. Kohn:
A Formal MIM Specification and Tools for the Common Exchange of MIM Diagrams: an XML-Based Format, an API, and a Validation Method. BMC Bioinform. 12: 167 (2011)
2000 – 2009
- 2007
- [j1]Augustin Luna, Kristin K. Nicodemus:
snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package. Bioinform. 23(6): 774-776 (2007)
Coauthor Index
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