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Christoph Junghans
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2020 – today
- 2023
- [j16]James Vance
, Zhen-Hao Xu, Nikita Tretyakov, Torsten Stuehn, Markus Rampp, Sebastian Eibl, Christoph Junghans
, André Brinkmann
:
Code modernization strategies for short-range non-bonded molecular dynamics simulations. Comput. Phys. Commun. 290: 108760 (2023) - [j15]Philipp Grete
, Joshua C. Dolence
, Jonah M. Miller
, Joshua Brown, Ben Ryan
, Andrew Gaspar, Forrest Wolfgang Glines, Sriram Swaminarayan, Jonas Lippuner, Clell J. Solomon, Galen M. Shipman
, Christoph Junghans
, Daniel Holladay
, James M. Stone, Luke F. Roberts:
Parthenon - a performance portable block-structured adaptive mesh refinement framework. Int. J. High Perform. Comput. Appl. 37(5): 465-486 (2023) - [j14]Rene Halver, Christoph Junghans
, Godehard Sutmann
:
Using heterogeneous GPU nodes with a Cabana-based implementation of MPCD. Parallel Comput. 117: 103033 (2023) - 2022
- [j13]Stuart R. Slattery
, Samuel Temple Reeve
, Christoph Junghans
, Damien Lebrun-Grandié
, Robert F. Bird, Guangye Chen, Shane Fogerty, Yuxing Qiu
, Stephan Schulz, Aaron Scheinberg, Austin Isner, Kwitae Chong, Stan G. Moore, Timothy C. Germann, James F. Belak, Susan M. Mniszewski:
Cabana: A Performance Portable Library for Particle-Based Simulations. J. Open Source Softw. 7(72): 4115 (2022) - [j12]Aleksandra Pachalieva
, Robert S. Pavel
, Javier E. Santos
, Abdourahmane Diaw
, Nicholas Lubbers
, Mohammed Mehana
, Jeffrey R. Haack
, Hari S. Viswanathan
, Daniel Livescu
, Timothy C. Germann
, Christoph Junghans
:
GLUE Code: A framework handling communication and interfaces between scales. J. Open Source Softw. 7(80): 4822 (2022) - [c3]Rene Halver
, Christoph Junghans
, Godehard Sutmann
:
Kokkos-Based Implementation of MPCD on Heterogeneous Nodes. PPAM (2) 2022: 3-13 - [i4]Philipp Grete, Joshua C. Dolence, Jonah M. Miller, Joshua Brown, Ben Ryan, Andrew Gaspar, Forrest Wolfgang Glines, Sriram Swaminarayan, Jonas Lippuner, Clell J. Solomon, Galen M. Shipman, Christoph Junghans
, Daniel Holladay, James M. Stone:
Parthenon - a performance portable block-structured adaptive mesh refinement framework. CoRR abs/2202.12309 (2022) - [i3]Satish Karra, Mohammed Mehana, Nicholas Lubbers, Yu Chen, Abdourahmane Diaw, Javier E. Santos, Aleksandra Pachalieva, Robert S. Pavel, Jeffrey R. Haack, Michael M. McKerns, Christoph Junghans
, Qinjun Kang
, Daniel Livescu, Timothy C. Germann, Hari S. Viswanathan:
Predictive Scale-Bridging Simulations through Active Learning. CoRR abs/2209.09811 (2022) - [i2]Rene Halver, Christoph Junghans
, Godehard Sutmann:
Kokkos-Based Implementation of MPCD on Heterogeneous Nodes. CoRR abs/2212.11878 (2022) - 2021
- [j11]József Bakosi, Robert F. Bird, F. Gonzalez, Christoph Junghans
, Weizhao Li, Hong Luo, Aditya K. Pandare, Jacob Waltz:
Asynchronous distributed-memory task-parallel algorithm for compressible flows on unstructured 3D Eulerian grids. Adv. Eng. Softw. 160: 102962 (2021) - [j10]Susan M. Mniszewski
, James F. Belak
, Jean-Luc Fattebert
, Christian F. A. Negre, Stuart R. Slattery, Adetokunbo A. Adedoyin, Robert F. Bird, Choong-Seock Chang
, Guangye Chen, Stéphane Ethier, Shane Fogerty, Salman Habib, Christoph Junghans
, Damien Lebrun-Grandié
, Jamaludin Mohd-Yusof
, Stan G. Moore, Daniel Osei-Kuffuor
, Steven J. Plimpton, Adrian Pope, Samuel Temple Reeve, Lee F. Ricketson, Aaron Scheinberg, Amil Y. Sharma, Michael E. Wall
:
Enabling particle applications for exascale computing platforms. Int. J. High Perform. Comput. Appl. 35(6): 572-597 (2021) - [i1]Susan M. Mniszewski, James F. Belak, Jean-Luc Fattebert, Christian F. A. Negre, Stuart R. Slattery, Adetokunbo Adedoyin, Robert F. Bird, Choong-Seock Chang, Guangye Chen, Stéphane Ethier, Shane Fogerty, Salman Habib, Christoph Junghans
, Damien Lebrun-Grandié, Jamaludin Mohd-Yusof, Stan G. Moore, Daniel Osei-Kuffuor, Steven J. Plimpton, Adrian Pope, Samuel Temple Reeve, Lee F. Ricketson, Aaron Scheinberg, Amil Y. Sharma, Michael E. Wall:
Enabling particle applications for exascale computing platforms. CoRR abs/2109.09056 (2021)
2010 – 2019
- 2019
- [j9]Horacio V. Guzman
, Nikita Tretyakov, Hideki Kobayashi
, Aoife C. Fogarty, Karsten Kreis, Jakub Krajniak
, Christoph Junghans
, Kurt Kremer, Torsten Stuehn:
ESPResSo++ 2.0: Advanced methods for multiscale molecular simulation. Comput. Phys. Commun. 238: 66-76 (2019) - 2017
- [j8]Christoph Junghans
, Animesh Agarwal, Luigi Delle Site:
Computational efficiency and Amdahl's law for the adaptive resolution simulation technique. Comput. Phys. Commun. 215: 20-25 (2017) - [c2]Samuel K. Gutierrez
, Kei Davis, Dorian C. Arnold, Randal S. Baker, Robert W. Robey, Patrick S. McCormick, Daniel Holladay, Jon A. Dahl, R. Joe Zerr, Florian Weik, Christoph Junghans
:
Accommodating Thread-Level Heterogeneity in Coupled Parallel Applications. IPDPS 2017: 469-478 - 2015
- [j7]Dominic Roehm, Robert S. Pavel, Kipton Barros
, Bertrand Rouet-Leduc
, Allen L. McPherson, Timothy C. Germann
, Christoph Junghans
:
Distributed Database Kriging for Adaptive Sampling (D2KAS). Comput. Phys. Commun. 192: 138-147 (2015) - [j6]Stas Bevc, Christoph Junghans
, Matej Praprotnik:
STOCK: Structure mapper and online coarse-graining kit for molecular simulations. J. Comput. Chem. 36(7): 467-477 (2015) - [j5]Susan M. Mniszewski
, Christoph Junghans
, Arthur F. Voter, Danny Perez, Stephan J. Eidenbenz
:
TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics. ACM Trans. Model. Comput. Simul. 25(3): 15:1-15:26 (2015) - [c1]Robert S. Pavel, Allen L. McPherson, Timothy C. Germann
, Christoph Junghans
:
Database assisted distribution to improve fault tolerance for multiphysics applications. Co-HPC@SC 2015: 4:1-4:8 - 2014
- [j4]Bertrand Rouet-Leduc
, Kipton Barros
, Emmanuel Cieren
, Venmugil Elango
, Christoph Junghans
, Turab Lookman
, Jamaludin Mohd-Yusof
, Robert S. Pavel
, Axel Y. Rivera, Dominic Roehm, Allen L. McPherson, Timothy C. Germann
:
Spatial adaptive sampling in multiscale simulation. Comput. Phys. Commun. 185(7): 1857-1864 (2014) - 2011
- [j3]Christoph Junghans
, Wolfhard Janke, Michael Bachmann:
Hierarchies in nucleation transitions. Comput. Phys. Commun. 182(9): 1937-1940 (2011) - 2010
- [j2]Christoph Junghans
, Simón Poblete:
A reference implementation of the adaptive resolution scheme in ESPResSo. Comput. Phys. Commun. 181(8): 1449-1454 (2010)
2000 – 2009
- 2008
- [j1]Matej Praprotnik, Christoph Junghans
, Luigi Delle Site, Kurt Kremer:
Simulation approaches to soft matter: Generic statistical properties vs. chemical details. Comput. Phys. Commun. 179(1-3): 51-60 (2008)
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