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2020 – today
- 2024
[j18]Krishanu Das Baksi, Vatsala Pokhrel, Anand Eruvessi Pudavar, Sharmila S. Mande, Bhusan K. Kuntal:
BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text. Comput. Biol. Chem. 109: 108012 (2024)- 2023
- [i1]Krishanu Das Baksi, Vatsala Pokhrel, Bhusan K. Kuntal, Sharmila S. Mande:
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text. CoRR abs/2305.07468 (2023) - 2021
- [j17]Sunil Nagpal
, Bhusan K. Kuntal, Sharmila S. Mande:
NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through Venn-integrated network diagrams. Bioinform. 37(4): 580-582 (2021) - [c1]Vatsala Pokhrel, Bhusan K. Kuntal, Divyanshu Srivastava, Sharmila S. Mande, Krishanu Das Baksi:
Utilizing domain-based features to improve classification accuracy of biomedical text having bacterial associations. BIBM 2021: 2840-2847 - 2020
- [j16]Swadha Anand, Bhusan K. Kuntal, Anwesha Mohapatra, Vineet Bhatt, Sharmila S. Mande:
FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information. Bioinform. 36(8): 2575-2577 (2020) - [j15]Sunil Nagpal, Rashmi Singh, Deepak Yadav, Sharmila S. Mande:
MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks. Nucleic Acids Res. 48(Webserver-Issue): W572-W579 (2020)
2010 – 2019
- 2019
- [j14]Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande:
Correction to: CompNet: a GUI based tool for comparison of multiple biological interaction networks. BMC Bioinform. 20(1): 600:1 (2019) - 2017
- [j13]Bhusan K. Kuntal, Sharmila S. Mande:
Web-igloo: a web based platform for multivariate data visualization. Bioinform. 33(4): 615-617 (2017) - 2016
- [j12]Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande:
CompNet: a GUI based tool for comparison of multiple biological interaction networks. BMC Bioinform. 17: 185 (2016) - 2015
- [j11]Anirban Dutta, Mohammed Monzoorul Haque, Tungadri Bose, Ch. V. Siva K. Reddy, Sharmila S. Mande:
FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets. J. Bioinform. Comput. Biol. 13(3): 1541003:1-1541003:18 (2015) - [j10]Tarini Shankar Ghosh, Varun Mehra, Sharmila S. Mande:
Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly. J. Bioinform. Comput. Biol. 13(3): 1541004:1-1541004:17 (2015) - 2012
- [j9]Sharmila S. Mande, Monzoorul Haque Mohammed, Tarini Shankar Ghosh:
Classification of metagenomic sequences: methods and challenges. Briefings Bioinform. 13(6): 669-681 (2012) - [j8]Monzoorul Haque Mohammed, Anirban Dutta, Tungadri Bose, Sudha Chadaram, Sharmila S. Mande:
DELIMINATE - a fast and efficient method for loss-less compression of genomic sequences: Sequence analysis. Bioinform. 28(19): 2527-2529 (2012) - 2011
- [j7]Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Nitin Kumar Singh, Sharmila S. Mande:
SPHINX - an algorithm for taxonomic binning of metagenomic sequences. Bioinform. 27(1): 22-30 (2011) - [j6]Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Hannah Rajasingh, Sudha Chadaram, Sharmila S. Mande:
HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences. BMC Bioinform. 12(S-13): S9 (2011) - 2010
- [j5]Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Sharmila S. Mande:
DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. BMC Bioinform. 11(S-7): S14 (2010)
2000 – 2009
- 2009
- [j4]Mohammed Monzoorul Haque, Tarini Shankar Ghosh, Dinakar Komanduri, Sharmila S. Mande:
SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. Bioinform. 25(14): 1722-1730 (2009) - [j3]Aparna B. Ganesh, Hannah Rajasingh, Sharmila S. Mande:
Mathematical Modeling of Regulation of Type III Secretion System in Salmonella enterica Serovar Typhimurium by SirA. Silico Biol. 9(1-2): S57-S72 (2009) - 2008
- [j2]Mathukumalli Vidyasagar, Sharmila S. Mande, Ch. V. Siva K. Reddy, V. V. Raja Rao:
The 4M (Mixed Memory Markov Model) Algorithm for Finding Genes in Prokaryotic Genomes. IEEE Trans. Autom. Control. 53: 26-37 (2008) - 2007
- [j1]Issaac Rajan, Sarang Aravamuthan, Sharmila S. Mande:
Identification of compositionally distinct regions in genomes using the centroid method. Bioinform. 23(20): 2672-2677 (2007)
Coauthor Index
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