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2020 – today
- 2024
[j25]Pietro Di Lena, Christine Nardini, Matteo Pellegrini:
Editorial: Computational methods for analysis of DNA methylation data, volume II. Frontiers Bioinform. 4 (2024)- [j24]Claudia Sala, Pietro Di Lena, Danielle Fernandes Durso, Ìtalo Faria do Valle, Maria Giulia Bacalini, Daniele Dall'Olio
, Claudio Franceschi, Gastone C. Castellani, Paolo Garagnani, Christine Nardini:
Where are we in the implementation of tissue-specific epigenetic clocks? Frontiers Bioinform. 4 (2024) - 2023
- [j23]Filippo Castiglione, Christine Nardini, Elia Onofri, Marco Pedicini, Paolo Tieri:
Explainable Drug Repurposing Approach From Biased Random Walks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1009-1019 (2023) - 2022
- [j22]Pietro Di Lena, Claudia Sala, Christine Nardini:
Evaluation of different computational methods for DNA methylation-based biological age. Briefings Bioinform. 23(4) (2022) - [j21]Pietro Di Lena, Christine Nardini, Matteo Pellegrini:
Editorial: Computational Methods for Analysis of DNA Methylation Data. Frontiers Bioinform. 2 (2022) - 2021
- [j20]Darong Lai, Sheng Wang, Zhihong Chong, Weiwei Wu, Christine Nardini:
Task-oriented attributed network embedding by multi-view features. Knowl. Based Syst. 232: 107448 (2021) - [j19]Pietro Di Lena, Claudia Sala, Christine Nardini:
Estimage: a webserver hub for the computation of methylation age. Nucleic Acids Res. 49(Webserver-Issue): 199-206 (2021) - [c6]Darong Lai, Zheyi Liu, Junyao Huang, Zhihong Chong, Weiwei Wu, Christine Nardini:
Attention Based Subgraph Classification for Link Prediction by Network Re-weighting. CIKM 2021: 3171-3175 - 2020
- [j18]Pietro Di Lena, Claudia Sala, Andrea Prodi, Christine Nardini:
Methylation data imputation performances under different representations and missingness patterns. BMC Bioinform. 21(1): 268 (2020)
2010 – 2019
- 2019
- [j17]Pietro Di Lena, Claudia Sala, Andrea Prodi, Christine Nardini:
Missing value estimation methods for DNA methylation data. Bioinform. 35(19): 3786-3793 (2019) - 2017
- [j16]Xiaoyuan Zhou, Guofeng Meng, Christine Nardini, Hongkang Mei:
Systemic evaluation of cellular reprogramming processes exploiting a novel R-tool: eegc. Bioinform. 33(16): 2532-2538 (2017) - 2016
- [j15]Xiaoyuan Zhou, Christine Nardini:
A method for automated pathogenic content estimation with application to rheumatoid arthritis. BMC Syst. Biol. 10: 107:1-107:8 (2016) - 2015
- [j14]Jennifer E. Dent, Valentina Devescovi, Han Li, Pietro Di Lena, Youtao Lu, Yuanhua Liu, Christine Nardini:
Mechanotransduction map: simulation model, molecular pathway, gene set. Bioinform. 31(7): 1053-1059 (2015) - 2013
- [j13]Jennifer E. Dent, Xinyi Yang, Christine Nardini:
SPNConverter: a new link between static and dynamic complex network analysis. Bioinform. 29(19): 2507-2508 (2013) - [j12]Pietro Di Lena, Gang Wu, Pier Luigi Martelli, Rita Casadio, Christine Nardini:
MIMO: an efficient tool for molecular interaction maps overlap. BMC Bioinform. 14: 159 (2013) - [j11]Jennifer E. Dent, Christine Nardini:
From desk to bed: Computational simulations provide indication for rheumatoid arthritis clinical trials. BMC Syst. Biol. 7: 10 (2013) - [j10]Yuanhua Liu, Valentina Devescovi, Suning Chen, Christine Nardini:
Multilevel omic data integration in cancer cell lines: advanced annotation and emergent properties. BMC Syst. Biol. 7: 14 (2013) - 2012
- [j9]Xinyi Yang, Jennifer E. Dent, Christine Nardini:
An S-System Parameter Estimation Method (SPEM) for Biological Networks. J. Comput. Biol. 19(2): 175-187 (2012) - [j8]Raffaele Fronza, Michele Tramonti, William R. Atchley, Christine Nardini:
Brain cancer prognosis: independent validation of a clinical bioinformatics approach. J. Clin. Bioinform. 2: 2 (2012) - 2011
- [j7]Darong Lai, Xinyi Yang, Gang Wu, Yuanhua Liu, Christine Nardini:
Inference of gene networks - application to Bifidobacterium. Bioinform. 27(2): 232-237 (2011) - [j6]Raffaele Fronza, Michele Tramonti, William R. Atchley, Christine Nardini:
Joint Analysis of Transcriptional and post- Transcriptional Data: Searching Emergent Properties in Brain Tumor Samples. BMC Bioinform. 12: 86 (2011) - 2010
- [j5]Darong Lai, Hongtao Lu, Mario Lauria, Diego di Bernardo, Christine Nardini:
Mania: a Gene Network Reverse Algorithm for Compounds Mode-of-Action and genes Interactions Inference. Adv. Complex Syst. 13(1): 83-94 (2010)
2000 – 2009
- 2009
- [c5]Darong Lai, Hongtao Lu, Mario Lauria, Diego di Bernardo, Christine Nardini:
MANIA: A Gene Network Reverse Algorithm for Compounds Mode-of-Action and Genes Interactions Inference. Complex (1) 2009: 389-399 - 2008
- [j4]Daniele Masotti, Christine Nardini, Simona Rossi, Elena Bonora, Giovanni Romeo, Stefano Volinia, Luca Benini:
TOM: enhancement and extension of a tool suite for in silico approaches to multigenic hereditary disorders. Bioinform. 24(3): 428-429 (2008) - [j3]Carlotta Guiducci, Christine Nardini:
High parallelism, portability, and broad accessibility: Technologies for genomics. ACM J. Emerg. Technol. Comput. Syst. 4(1): 3:1-3:39 (2008) - [c4]Christine Nardini, Luca Benini, Michael D. Kuo:
Statistical Significance in Omic Data Analyses - Alternative/Complementary Method for Efficient Automatic Identification of Statistically Significant Tests in High Throughput Biological Studies. BIOSIGNALS (1) 2008: 56-63 - [c3]Christine Nardini, Lei Wang, Hesen Peng, Luca Benini, Michael D. Kuo:
MM-Correction: Meta-analysis-Based Multiple Hypotheses Correction in Omic Studies. BIOSTEC (Selected Papers) 2008: 242-255 - 2006
- [b1]Christine Nardini:
Statistical-computational techniques for extraction of functional genomic units from microarray experiments. University of Bologna, Italy, 2006 - [j2]Simona Rossi, Daniele Masotti, Christine Nardini, Elena Bonora, Giovanni Romeo, Enrico Macii, Luca Benini, Stefano Volinia:
TOM: a web-based integrated approach for identification of candidate disease genes. Nucleic Acids Res. 34(Web-Server-Issue): 285-292 (2006) - [c2]Christine Nardini, Daniele Masotti, Sungroh Yoon, Enrico Macii, Michael D. Kuo, Giovanni De Micheli, Luca Benini:
Mining Gene Sets for Measuring Similarities. ISCC 2006: 227-232 - 2005
- [j1]Sungroh Yoon, Christine Nardini, Luca Benini, Giovanni De Micheli:
Discovering Coherent Biclusters from Gene Expression Data Using Zero-Suppressed Binary Decision Diagrams. IEEE ACM Trans. Comput. Biol. Bioinform. 2(4): 339-354 (2005) - 2004
- [c1]Sungroh Yoon, Christine Nardini, Luca Benini, Giovanni De Micheli:
Enhanced pClustering and Its Applications to Gene Expression Data. BIBE 2004: 275-282
Coauthor Index
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