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2020 – today
- 2024
[j13]Fengyuan Huang, Robert S. Welner, Jake Y. Chen, Zongliang Yue
:
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis. Frontiers Bioinform. 4 (2024)- 2022
- [j12]Thanh Nguyen, Zongliang Yue, Radomir Slominski, Robert S. Welner, Jianyi Zhang, Jake Y. Chen:
WINNER: A network biology tool for biomolecular characterization and prioritization. Frontiers Big Data 5 (2022) - 2021
- [j11]Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen:
Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples. Frontiers Big Data 4: 725276 (2021) - [j10]Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen:
Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples. Frontiers Big Data 4: 804141 (2021) - [j9]Zongliang Yue, Eric Zhang, Clark Xu, Sunny Khurana, Nishant Batra, Son Do Hai Dang, James J. Cimino, Jake Y. Chen:
PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies. Nucleic Acids Res. 49(Database-Issue): D589-D599 (2021) - [c3]Zongliang Yue, Nishant Batra, Hui-Chen Hsu, John Mountz, Jake Y. Chen:
PAGER-CoV-Run: An online interactive analytical platform for COVID-19 functional genomic downstream analysis. AMIA 2021
2010 – 2019
- 2019
- [j8]Zongliang Yue, Christopher D. Willey, Anita B. Hjelmeland, Jake Y. Chen:
BEERE: a web server for biomedical entity expansion, ranking and explorations. Nucleic Acids Res. 47(Webserver-Issue): W578-W586 (2019) - [j7]Zongliang Yue, Thanh Nguyen, Eric Zhang, Jianyi Zhang, Jake Y. Chen:
WIPER: Weighted in-Path Edge Ranking for biomolecular association networks. Quant. Biol. 7(4): 313-326 (2019) - 2018
- [j6]Zongliang Yue, Qi Zheng, Michael T. Neylon, Minjae Yoo, Jimin Shin, Zhiying Zhao, Aik Choon Tan, Jake Y. Chen:
PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology. Nucleic Acids Res. 46(Database-Issue): D668-D676 (2018) - [j5]Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Timothy Ratliff, Jake Y. Chen:
"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 1991-1998 (2018) - 2017
- [j4]Zongliang Yue, Itika Arora, Eric Y. Zhang, Vincent Laufer, S. Louis Bridges, Jake Y. Chen:
Repositioning drugs by targeting network modules: a Parkinson's disease case study. BMC Bioinform. 18(14): 17-30 (2017) - 2016
- [c2]Jake Y. Chen, Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Nafisa Bulsara, Itika Arora, Timothy Ratliff:
Towards constructing "Super Gene Sets" regulatory networks. BIBM 2016: 294-298 - 2015
- [j3]Zongliang Yue, Madhura M. Kshirsagar, Thanh Nguyen, Chayaporn Suphavilai, Michael T. Neylon, Liugen Zhu, Timothy Ratliff, Jake Yue Chen:
PAGER: constructing PAGs and new PAG-PAG relationships for network biology. Bioinform. 31(12): 250-257 (2015) - [j2]Hui Huang, Thanh Nguyen, Sara Ibrahim, Sandeep Shantharam, Zongliang Yue, Jake Y. Chen:
DMAP: a connectivity map database to enable identification of novel drug repositioning candidates. BMC Bioinform. 16(S13): S4 (2015) - 2014
- [j1]Zongliang Yue, Ping Wan, Hui Huang, Zhan Xie, Jake Yue Chen:
SLDR: a computational technique to identify novel genetic regulatory relationships. BMC Bioinform. 15(S-11): S1 (2014) - [c1]Zongliang Yue, Ping Wan, Zhan Xie, Jake Y. Chen:
Computational Identification of De-Centric Genetic Regulatory Relationships from Functional Genomic Data. ISBRA 2014: 224-235
Coauthor Index
aka: Jake Y. Chen
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