default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDPavel P. Kuksa
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
[j12]Jeffrey Cifello
, Pavel P. Kuksa, Naveensri Saravanan, Otto Valladares, Li-San Wang, Yuk Yee Leung:
hipFG: high-throughput harmonization and integration pipeline for functional genomics data. Bioinform. 39(11) (2023)- 2020
- [j11]Pavel P. Kuksa, Chien-Yueh Lee, Alexandre Amlie-Wolf, Prabhakaran Gangadharan, Elizabeth E. Mlynarski, Yi-Fan Chou, Han-Jen Lin, Heather Issen, Emily Greenfest-Allen, Otto Valladares, Yuk Yee Leung, Li-San Wang:
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants. Bioinform. 36(12): 3879-3881 (2020)
2010 – 2019
- 2019
- [j10]Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung:
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products. Bioinform. 35(6): 1033-1039 (2019) - 2018
- [j9]Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung:
SPAR: small RNA-seq portal for analysis of sequencing experiments. Nucleic Acids Res. 46(Webserver-Issue): W36-W42 (2018) - 2016
- [j8]Yuk Yee Leung, Pavel P. Kuksa, Alexandre Amlie-Wolf, Otto Valladares, Lyle H. Ungar, Sampath Kannan, Brian D. Gregory, Li-San Wang:
DASHR: database of small human noncoding RNAs. Nucleic Acids Res. 44(Database-Issue): 216-222 (2016) - 2015
- [j7]Yih-Chii Hwang, Chiao-Feng Lin, Otto Valladares, John Malamon, Pavel P. Kuksa, Qi Zheng, Brian D. Gregory, Li-San Wang:
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements. Bioinform. 31(8): 1290-1292 (2015) - [j6]Pavel P. Kuksa, Martin Renqiang Min, Rishabh Dugar, Mark Gerstein:
High-order neural networks and kernel methods for peptide-MHC binding prediction. Bioinform. 31(22): 3600-3607 (2015) - 2014
- [i2]Pavel P. Kuksa:
Efficient multivariate sequence classification. CoRR abs/1409.8211 (2014) - 2013
- [j5]Pavel P. Kuksa:
Biological Sequence Classification with Multivariate String Kernels. IEEE ACM Trans. Comput. Biol. Bioinform. 10(5): 1201-1210 (2013) - 2012
- [c13]Pavel P. Kuksa:
2D similarity kernels for biological sequence classification. BIOKDD 2012: 15-20 - [c12]Pavel P. Kuksa, Vladimir Pavlovic:
Efficient evaluation of large sequence kernels. KDD 2012: 759-767 - [c11]Pavel P. Kuksa, Imdadullah Khan, Vladimir Pavlovic:
Generalized Similarity Kernels for Efficient Sequence Classification. SDM 2012: 873-882 - 2011
- [j4]Ronan Collobert, Jason Weston, Léon Bottou, Michael Karlen, Koray Kavukcuoglu, Pavel P. Kuksa:
Natural Language Processing (Almost) from Scratch. J. Mach. Learn. Res. 12: 2493-2537 (2011) - [i1]Ronan Collobert, Jason Weston, Léon Bottou, Michael Karlen, Koray Kavukcuoglu, Pavel P. Kuksa:
Natural Language Processing (almost) from Scratch. CoRR abs/1103.0398 (2011) - 2010
- [j3]Pavel P. Kuksa, Vladimir Pavlovic:
Efficient motif finding algorithms for large-alphabet inputs. BMC Bioinform. 11(S-8): S1 (2010) - [c10]Pavel P. Kuksa, Vladimir Pavlovic:
Spatial Representation for Efficient Sequence Classification. ICPR 2010: 3320-3323 - [c9]Pavel P. Kuksa, Yanjun Qi, Bing Bai, Ronan Collobert, Jason Weston, Vladimir Pavlovic, Xia Ning:
Semi-supervised Abstraction-Augmented String Kernel for Multi-level Bio-Relation Extraction. ECML/PKDD (2) 2010: 128-144 - [c8]Pavel P. Kuksa, Yanjun Qi:
Semi-supervised Bio-named Entity Recognition with Word-Codebook Learning. SDM 2010: 25-36
2000 – 2009
- 2009
- [j2]Pavel P. Kuksa, Vladimir Pavlovic:
Efficient alignment-free DNA barcode analytics. BMC Bioinform. 10(S-14): 9 (2009) - [j1]Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic:
Efficient use of unlabeled data for protein sequence classification: a comparative study. BMC Bioinform. 10(S-4) (2009) - [c7]Pavel P. Kuksa, Vladimir Pavlovic:
Fast Motif Selection for Biological Sequences. BIBM 2009: 79-82 - [c6]Yanjun Qi, Ronan Collobert, Pavel P. Kuksa, Koray Kavukcuoglu, Jason Weston:
Combining labeled and unlabeled data with word-class distribution learning. CIKM 2009: 1737-1740 - [c5]Yanjun Qi, Pavel P. Kuksa, Ronan Collobert, Kunihiko Sadamasa, Koray Kavukcuoglu, Jason Weston:
Semi-Supervised Sequence Labeling with Self-Learned Features. ICDM 2009: 428-437 - 2008
- [c4]Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic:
On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification. BIBM 2008: 217-222 - [c3]Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic:
Fast protein homology and fold detection with sparse spatial sample kernels. ICPR 2008: 1-4 - [c2]Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic:
Scalable Algorithms for String Kernels with Inexact Matching. NIPS 2008: 881-888 - 2007
- [c1]Pavel P. Kuksa, Vladimir Pavlovic:
Fast Kernel Methods for SVM Sequence Classifiers. WABI 2007: 228-239
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 21:21 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
