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SoftwareX, Volume 12
Volume 12, July 2020
- Guus Rongen, Cornelis Marcel Pieter 't Hart, Georgios Leontaris, Oswaldo Morales-Nápoles
:
Update (1.2) to ANDURIL and ANDURYL: Performance improvements and a graphical user interface. 100497 - Rebecca W. Loraamm, Joni A. Downs, James Anderson, David S. Lamb
:
PySTPrism: Tools for voxel-based space-time prisms. 100499 - Sahar Hojati
, Rahele Kafieh, Parisa Fardafshari, Masoud Aghsaei Fard, Hatef Fouladi:
A MATLAB package for automatic extraction of flow index in OCT-A images by intelligent vessel manipulation. 100510 - Luca Ardito
, Marco Torchiano
, Riccardo Coppola, Giulio Antoniol:
PowTrAn: An R Package for power trace analysis. 100512 - Giuseppe Futia, Antonio Vetrò
, Juan Carlos De Martin:
SeMi: A SEmantic Modeling machIne to build Knowledge Graphs with graph neural networks. 100516 - Panagiotis E. Hadjidoukas, Andrea Bartezzaghi, Florian Scheidegger
, Roxana Istrate, Costas Bekas, A. Cristiano I. Malossi
:
torcpy: Supporting task parallelism in Python. 100517 - Azim Ahmadzadeh
, Kankana Sinha, Berkay Aydin
, Rafal A. Angryk:
MVTS-Data Toolkit: A Python package for preprocessing multivariate time series data. 100518 - Paulo Paneque Galuzio
, Emerson Hochsteiner de Vasconcelos Segundo, Leandro dos Santos Coelho
, Viviana Cocco Mariani
:
MOBOpt - multi-objective Bayesian optimization. 100520 - Marco Sampaio Rodrigues
, Rui M. S. Pereira
, Mikhail I. Vasilevskiy, Joel Borges
, Filipe Vaz
:
NANOPTICS: In-depth analysis of NANomaterials for OPTICal localized surface plasmon resonance Sensing. 100522 - Crispin H. V. Cooper, Alain J. F. Chiaradia
:
sDNA: 3-d spatial network analysis for GIS, CAD, Command Line & Python. 100525 - Yifei Zhang, Jia Cao:
GSimPy: A Python package for measuring group similarity. 100526 - Oleksiy V. Penkov
, Igor A. Kopylets
, Mahdi Khadem, Tianzuo Qin:
X-Ray Calc: A software for the simulation of X-ray reflectivity. 100528 - Johannes Keller
, Volker Rath, Johanna Bruckmann
, Darius Mottaghy, Christoph Clauser, Andreas Wolf, Ralf Seidler, H. Martin Bücker
, Norbert Klitzsch:
SHEMAT-Suite: An open-source code for simulating flow, heat and species transport in porous media. 100533 - João Rafael Almeida
, Armando J. Pinho, José Luís Oliveira, Olga Fajarda
, Diogo Pratas
:
GTO: A toolkit to unify pipelines in genomic and proteomic research. 100535 - Luís Mendes
, Alexandre Bernardino
, Rui M. L. Ferreira
:
piv-image-generator: An image generating software package for planar PIV and Optical Flow benchmarking. 100537 - Cemre Cubukcuoglu
, Pirouz Nourian
, I. Sevil Sariyildiz, Mehmet Fatih Tasgetiren
:
A discrete event simulation procedure for validating programs of requirements: The case of hospital space planning. 100539 - Mokbel Karam
, James C. Sutherland, Tony Saad:
PyModPDE: A python software for modified equation analysis. 100541 - Daniel Leal Fagundes, Jair Trapé Goulart
:
ContHeart: Software for monitoring isolated cardiomyocyte shortening. 100547 - Dafne E. van Kuppevelt, Christiaan Meijer, Florian Huber, A. van der Ploeg, S. Georgievska, Vincent T. van Hees
:
Mcfly: Automated deep learning on time series. 100548 - Alessio Sclocco
, Stijn Heldens, Ben van Werkhoven:
AMBER: A real-time pipeline for the detection of single pulse astronomical transients. 100549 - Paul Bartholomew
, Georgios Deskos
, Ricardo A. S. Frantz, Felipe N. Schuch, Eric Lamballais, Sylvain Laizet:
Xcompact3D: An open-source framework for solving turbulence problems on a Cartesian mesh. 100550 - Rudolf Ferenc, Tamás Viszkok, Tamás Aladics, Judit Jász, Péter Hegedüs:
Deep-water framework: The Swiss army knife of humans working with machine learning models. 100551 - Murat Çaliskan, Berk Anbaroglu:
Geo-MST: A geographical minimum spanning tree plugin for QGIS. 100553 - Amarin Siripanich, Taha Hossein Rashidi:
Dymium: A modular microsimulation modelling framework for integrated urban modelling. 100555 - Kyriakos Panagiotidis
, Naoum Tsolakis, Alexander Tsigkas:
HC-4-PM: A heterarchical communication framework for project management. 100557 - Michael G. Leeming
, Andrew P. Isaac, Luke Zappia
, Richard A. J. O'hair, William A. Donald
, Bernard J. Pope
:
HiTIME: An efficient model-selection approach for the detection of unknown drug metabolites in LC-MS data. 100559 - William F. Godoy
, Norbert Podhorszki
, Ruonan Wang, Chuck Atkins, Greg Eisenhauer, Junmin Gu, Philip E. Davis, Jong Choi, Kai Germaschewski, Kevin A. Huck
, Axel Huebl
, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan
, Kshitij Mehta, George Ostrouchov, Manish Parashar, Franz Poeschel, David Pugmire, Eric Suchyta
, Keichi Takahashi
, Nick Thompson, Seiji Tsutsumi, Lipeng Wan, Matthew Wolf, Kesheng Wu
, Scott Klasky:
ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management. 100561 - Federico Tartarini
, Stefano Schiavon, Toby Cheung, Tyler Hoyt:
CBE Thermal Comfort Tool: Online tool for thermal comfort calculations and visualizations. 100563 - João Bispo, João M. P. Cardoso
:
Clava: C/C++ source-to-source compilation using LARA. 100565 - Cristian Jimenez
, Iván Amaya, Rodrigo Correa:
SpinUpFlowDescriptor: A MATLAB toolbox for ferrofluids materials under moderate and high amplitude and frequency of magnetic rotating fields in a spin-up geometry. 100567 - Michele Castelluzzo
, Alessio Perinelli
, Simone Detassis
, Michela Alessandra Denti
, Leonardo Ricci
:
MiRNA-QC-and-Diagnosis: An R package for diagnosis based on MiRNA expression. 100569 - Orod Razeghi
, José Alonso Solís-Lemus, Angela W. C. Lee, Rashed Karim, Cesare Corrado, Caroline H. Roney
, Adelaide de Vecchi
, Steven A. Niederer:
CemrgApp: An interactive medical imaging application with image processing, computer vision, and machine learning toolkits for cardiovascular research. 100570 - Stefan Dähling, Lukas Razik, Antonello Monti
:
OWL2Go: Auto-generation of Go data models for OWL ontologies with integrated serialization and deserialization functionality. 100571 - Vasyl Skorych
, Maksym Dosta, Stefan Heinrich:
Dyssol - An open-source flowsheet simulation framework for particulate materials. 100572 - Eric Medvet, Alberto Bartoli, Andrea De Lorenzo, Stefano Seriani:
2D-VSR-Sim: A simulation tool for the optimization of 2-D voxel-based soft robots. 100573 - Iván González Torre
, Richard J. Heck, A. M. Tarquis:
MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images. 100574 - James B. Scoggins, Vincent Leroy, Georgios Bellas-Chatzigeorgis, Bruno Dias, Thierry E. Magin
:
Mutation++: MUlticomponent Thermodynamic And Transport properties for IONized gases in C++. 100575 - Michael Adams, Andreas V. Hense, Arthur H. M. ter Hofstede
:
YAWL: An open source Business Process Management System from science for science. 100576 - Leandro Lima Rasmussen:
UnBlocksgen: A Python library for 3D rock mass generation and analysis. 100577 - Federico Tartarini
, Stefano Schiavon:
pythermalcomfort: A Python package for thermal comfort research. 100578 - Bruno Blais, Lucka Barbeau
, Valérie Bibeau
, Simon Gauvin, Toni El Geitani, Shahab Golshan, Rajeshwari Kamble, Ghazaleh Mirakhori, Jamal Chaouki:
Lethe: An open-source parallel high-order adaptative CFD solver for incompressible flows. 100579 - Xavier Alejandro Flores Cabezas
, Martha Cecilia Paredes Paredes
, Luis Felipe Urquiza-Aguiar, Diego Javier Reinoso Chisaguano
:
PhySim-11p: Simulation model for IEEE 802.11p physical layer in MATLAB. 100580 - Yoann Ladroit
, Pablo C. Escobar-Flores, Alexandre C. G. Schimel
, Richard L. O'Driscoll:
ESP3: An open-source software for the quantitative processing of hydro-acoustic data. 100581 - Brittany L. Bruder, Katherine L. Brodie
:
CIRN Quantitative Coastal Imaging Toolbox. 100582 - Sebastian Semper, Michael Döbereiner
, Sankalp Pawar, Markus H. Landmann, Giovanni Del Galdo
:
eadf: Representation of far-field antenna responses in Python. 100583 - Matthew P. Conlin
, Peter N. Adams, Benjamin Wilkinson
, Gregory Dusek
, Margaret L. Palmsten, Jenna A. Brown
:
SurfRCaT: A tool for remote calibration of pre-existing coastal cameras to enable their use as quantitative coastal monitoring tools. 100584 - Hadar Ben-Gida
, Roi Gurka
, Alex Liberzon
:
OpenPIV-MATLAB - An open-source software for particle image velocimetry; test case: Birds' aerodynamics. 100585 - Sebastian Muraru, Jorge S. Burns
, Mariana Ionita:
GOPY: A tool for building 2D graphene-based computational models. 100586 - J. Degallaix:
OSCAR: A MATLAB based package to simulate realistic optical cavities. 100587 - Dominik Paprotny
, Oswaldo Morales-Nápoles
, Daniël T. H. Worm, Elisa Ragno:
BANSHEE-A MATLAB toolbox for Non-Parametric Bayesian Networks. 100588 - Domenico Suriano
:
SentinAir system software: A flexible tool for data acquisition from heterogeneous sensors and devices. 100589 - Alexandre Decan, Tom Mens:
Sismic - A Python library for statechart execution and testing. 100590 - Lars Hertel, Julian Collado
, Peter J. Sadowski
, Jordan Ott, Pierre Baldi:
Sherpa: Robust hyperparameter optimization for machine learning. 100591 - Vítor Silva, Vinícius Campos
, Thaylon Guedes, José J. Camata, Daniel de Oliveira, Alvaro L. G. A. Coutinho, Patrick Valduriez, Marta Mattoso
:
DfAnalyzer: Runtime dataflow analysis tool for Computational Science and Engineering applications. 100592 - Andrzej Daniluk
:
rheed++: A C++ framework to simulation of RHEED intensity oscillations during the growth of thin epitaxial films. 100593 - Sofya Kulikova:
StimVis: A tool for interactive computation of the TMS-induced effects over tractography data. 100594 - Kenneth A. Hart
, Julian J. Rimoli
:
MicroStructPy: A statistical microstructure mesh generator in Python. 100595 - Stefano Bonduà, Villiam Bortolotti:
TOUGH2Viewer 2.0: A multiplatform tool for fully 3D Voronoi TOUGH grids. 100596 - Adrian Linsel, Kristian Bär, Joshua Haas, Jens Hornung, Matthias D. Greb, Matthias Hinderer:
GeoReVi: A knowledge discovery and data management tool for subsurface characterization. 100597 - Manish Anand
, Jed A. Diekfuss
, Alexis B. Slutsky-Ganesh, Scott Bonnette, Dustin R. Grooms
, Gregory D. Myer
:
Graphical interface for automated management of motion artifact within fMRI acquisitions: INFOBAR. 100598 - Simone Cirani
, Marco Picone
, Luca Veltri, Luca Zaccomer
, Francesco Zanichelli:
ZWT: A new cross-platform graphical interface framework for Java applications. 100599 - Jakob Lass
, Henrik Jacobsen
, Daniel G. Mazzone, Kim Lefmann
:
MJOLNIR: A software package for multiplexing neutron spectrometers. 100600 - Juan C. Martínez-Franco, Edgar Céspedes-Sabogal, David Álvarez-Martínez:
PackageCargo: A decision support tool for the container loading problem with stability. 100601 - Julien Loiseau, Hyun Lim
, Mark Alexander Kaltenborn
, Oleg Korobkin
, Christopher M. Mauney, Irina Sagert
, Wesley P. Even, Benjamin K. Bergen:
FleCSPH: The next generation FleCSIble parallel computational infrastructure for smoothed particle hydrodynamics. 100602 - German A. Sinuco-Leon
:
OPENMMF: A library for multimode driven quantum systems. 100603 - Guilherme Lindner
, Yann Devaux
, Sanja Miskovic:
VortexFitting: A post-processing fluid mechanics tool for vortex identification. 100604 - L. van Kessel, C. W. Hagen
:
Nebula: Monte Carlo simulator of electron-matter interaction. 100605 - João Victor da Silva Guerra, Helder Veras Ribeiro filho, Leandro Oliveira Bortot
, Rodrigo Vargas Honorato, José Geraldo de Carvalho Pereira, Paulo Sérgio Lopes-de-Oliveira:
ParKVFinder: A thread-level parallel approach in biomolecular cavity detection. 100606 - Ahmed Elkady
, Dimitrios G. Lignos:
EaRL - Software for Earthquake Risk, Loss and Lifecycle Analysis. 100607 - Gijs van den Oord, Fredrik Jansson
, F. Inti Pelupessy, Maria Chertova, Johanna H. Grönqvist, Pier Siebesma, Daan Crommelin
:
A Python interface to the Dutch Atmospheric Large-Eddy Simulation. 100608 - Nan-Hung Hsieh, Brad Reisfeld, Weihsueh A. Chiu
:
pksensi: An R package to apply global sensitivity analysis in physiologically based kinetic modeling. 100609 - Sascha Bub, Thorsten Schad, Zhenglei Gao
:
XDrift - An R package to simulate spatially explicit pesticide spray-drift exposure of non-target-species habitats at landscape scales. 100610 - Jan Wilhelm Gärtner, Andreas Kronenburg, Tobias Martin:
Efficient WENO library for OpenFOAM. 100611 - Lia Morra
, Francesco Manigrasso, Fabrizio Lamberti
:
SoccER: Computer graphics meets sports analytics for soccer event recognition. 100612 - Daniel D. Brown, Philip Jones, Samuel Rowlinson, Sean Leavey
, Anna C. Green, Daniel Töyrä, Andreas Freise:
Pykat: Python package for modelling precision optical interferometers. 100613 - Claudio Lucchese, Cristina Ioana Muntean
, Franco Maria Nardini
, Raffaele Perego
, Salvatore Trani:
RankEval: Evaluation and investigation of ranking models. 100614 - Spencer H. Bryngelson
, Tim Colonius
, Rodney O. Fox
:
QBMMlib: A library of quadrature-based moment methods. 100615 - Carlos Argáez
, Peter Giesl
, Sigurdur Freyr Hafstein:
Update (2.0) to LyapXool: Eigenpairs and new classification methods. 100616 - Dovydas Joksas
, Adnan Mehonic
:
badcrossbar: A Python tool for computing and plotting currents and voltages in passive crossbar arrays. 100617 - Maksym Dosta
, Vasyl Skorych
:
MUSEN: An open-source framework for GPU-accelerated DEM simulations. 100618 - Florent Robinet, Nicolas Arnaud, Nicolas Leroy
, Andrew Lundgren
, Duncan Macleod, Jessica McIver:
Omicron: A tool to characterize transient noise in gravitational-wave detectors. 100620 - Sergio A. Barcellos Lins
, Boris Bremmers
, Giovanni E. Gigante
:
XISMuS - X-ray fluorescence imaging software for multiple samples. 100621 - Davide Ninni
, Miguel A. Mendez
:
MODULO: A software for Multiscale Proper Orthogonal Decomposition of data. 100622 - Luka Cehovin Zajc:
A modular toolkit for visual tracking performance evaluation. 100623 - Nathan Fox
, Tom August, Francesca Mancini, Katherine E. Parks, Felix Eigenbrod, James M. Bullock, Louis Sutter, Laura J. Graham
:
"photosearcher" package in R: An accessible and reproducible method for harvesting large datasets from Flickr. 100624 - Christiaan Meijer, Meiert W. Grootes, Zsófia Koma, Yifat Dzigan
, R. Gonçalves, B. Andela, G. van den Oord, Elena Ranguelova, Nicolas Renaud, W. Daniel Kissling:
Laserchicken - A tool for distributed feature calculation from massive LiDAR point cloud datasets. 100626 - Jorge M. Cruz-Duarte
, Iván Amaya, José Carlos Ortiz-Bayliss
, Hugo Terashima-Marín
, Yong Shi:
CUSTOMHyS: Customising Optimisation Metaheuristics via Hyper-heuristic Search. 100628 - R. Siddharth
, Gnanasekaran Aghila:
RandPro- A practical implementation of random projection-based feature extraction for high dimensional multivariate data analysis in R. 100629 - Kamila Zdybal
, Elizabeth Armstrong
, Alessandro Parente
, James C. Sutherland
:
PCAfold: Python software to generate, analyze and improve PCA-derived low-dimensional manifolds. 100630 - Ahmed Sleem, Mohamed Abdel-Baset, Ibrahim M. El-Henawy:
PyIVNS: A python based tool for Interval-valued neutrosophic operations and normalization. 100632 - Stefano Dalla Palma
, Dario Di Nucci
, Damian A. Tamburri
:
AnsibleMetrics: A Python library for measuring Infrastructure-as-Code blueprints in Ansible. 100633 - Karl Wette
:
SWIGLAL: Python and Octave interfaces to the LALSuite gravitational-wave data analysis libraries. 100634 - Luca Ardito, Luca Barbato, Marco Castelluccio, Riccardo Coppola, Calixte Denizet, Sylvestre Ledru, Michele Valsesia:
rust-code-analysis: A Rust library to analyze and extract maintainability information from source codes. 100635 - Gregorio Mariggiò
, Sebastiano Fichera
, Mauro Corrado, Giulio Ventura
:
EQP - A 2D/3D library for integration of polynomials times step function. 100636 - Giorgio Luciano
, Kristian Hovde Liland
, M. Marsotto, Roman Svoboda, Serena Berretta:
takos: An R package for thermal analysis calculations. 100637 - Editorial Board. 100649
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