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ORCID7. DNA 2001: Tampa, Florida, USA
- Natasa Jonoska, Nadrian C. Seeman:
DNA Computing, 7th International Workshop on DNA-Based Computers, DNA7, Tampa, Florida, USA, June 10-13, 2001, Revised Papers. Lecture Notes in Computer Science 2340, Springer 2002, ISBN 3-540-43775-4
Experimental Tools
- Thomas Hinze, Uwe Hatnik, Monika Sturm:
An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification. 1-13 - Satoshi Kashiwamura, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi:
Towards Optimization of PCR Protocol in DNA Computing. 14-22 - Udo Feldkamp, Sam Saghafi, Wolfgang Banzhaf, Hilmar Rauhe:
DNASequencesGenerator: A Program for the Construction of DNA Sequences. 23-32 - Danny van Noort
, Frank-Ulrich Gast, John S. McCaskill:
DNA Computing in Microreactors. 33-45 - Robert Penchovsky, John S. McCaskill:
Cascadable Hybridisation Transfer of Specific DNA between Microreactor Selection Modules. 46-56
Theoretical Tools
- Salah Hussini, Lila Kari, Stavros Konstantinidis:
Coding Properties of DNA Languages. 57-69 - Natasa Jonoska, Masahico Saito:
Boundary Components of Thickened Graphs. 70-81
Probabilistic Computational Models
- Yasubumi Sakakibara:
Population Computation and Majority Inference in Test Tube. 82-91 - David Harlan Wood, Hong Bi, Steven Orla Kimbrough, Dong-Jun Wu, Junghuei Chen:
DNA Starts to Learn Poker. 92-103 - John A. Rose, Russell J. Deaton, Masami Hagiya, Akira Suyama:
PNA-mediated Whiplash PCR. 104-116
Computer Simulation and Sequence Design
- Max H. Garzon, Chris Oehmen:
Biomolecular Computation in Virtual Test Tubes. 117-128 - Fumiaki Tanaka, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi:
Developing Support System for Sequence Design in DNA Computing. 129-137 - John A. Rose, Russell J. Deaton, Masami Hagiya, Akira Suyama:
The Fidelity of the Tag-Antitag System. 138-149 - Adam J. Ruben, Stephen J. Freeland, Laura F. Landweber:
PUNCH: An Evolutionary Algorithm for Optimizing Bit Set Selection. 150-160
Algorithms
- Mario J. Pérez-Jiménez, Fernando Sancho-Caparrini:
Solving Knapsack Problems in a Sticker Based Model. 161-171 - Vincenzo Manca, Claudio Zandron:
A Clause String DNA Algorithm for SAT. 172-181 - Yoichi Takenaka, Akihiro Hashimoto:
A Proposal of DNA Computing on Beads with Application to SAT Problems. 182-190
Experimental Solution
- Tom Head, Xia Chen, Matthew J. Nichols, Masayuki Yamamura, Susannah Gal:
Aqueous Solutions of Algorithmic Problems: Emphasizing Knights on a 3 x 3. 191-202 - Masahito Yamamoto, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe, Azuma Ohuchi:
Solutions of Shortest Path Problems by Concentration Control. 203-212 - Masayuki Yamamoto, Yusuke Hiroto, Taku Motoba:
Another Realization of Aqueous Computing with Peptide Nucleic Acid. 213-222 - Yevgenia Khodor, Julia Khodor, Thomas F. Knight Jr.:
Experimental Conformation of the Basic Principles of Length-only Discrimination. 223-230 - John H. Reif, Thomas H. LaBean, Michael Pirrung, Vipul S. Rana, Bo Guo, Carl Kingsford, Gene S. Wickham:
Experimental Construction of Very Large Scale DNA Databases with Associative Search Capability. 231-247
Nano-tech Devices
- Friedrich C. Simmel, Bernard Yurke:
Operation of a Purified DNA Nanoactuator. 248-257 - James C. Mitchell, Bernard Yurke:
DNA Scissors. 258-268
Biomimetic Tools
- Kenichi Wakabayashi, Masayuki Yamamura:
A Realization of Information Gate by Using Enterococcus faecalis Pheromone System. 269-378 - Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg:
Patterns of Micronuclear Genes in ciliates. 279-289 - M. Sakthi Balan, Kamala Krithivasan, Y. Sivasubramanyam:
Peptide Computing - Universality and Complexity. 290-299 - Julia Khodor, David K. Gifford:
Programmed Mutagenesis Is a Universal Model of Computation. 300-307
New Computing Models
- Hiroki Uejima, Masami Hagiya, Satoshi Kobayashi:
Horn Clause Computation by Self-assembly of DNA Molecules. 308-320 - Hubert Hug, Rainer Schuler:
DNA-based Parallel Computation of Simple Arithmetic. 321-328
Splicing Systems and Membranes
- Andrei Paun:
On P Systems with Global Rules. 329-339 - Maurice Margenstern, Carlos Martín-Vide, Gheorghe Paun:
Computing with Membranes: Variants with an Enhanced Membrane Handling. 340-349 - Angel V. Baranda, Fernando Arroyo, Juan Castellanos, Rafael Gonzalo:
Towards an Electronic Implementation of Membrane Computing: A Formal Description of Non-deterministic Evolution in Transition P Systems. 350-359 - Shankara Narayanan Krishna, Raghavan Rama:
Insertion-Deletion P Systems. 360-370 - Maurice Margenstern, Yurii Rogozhin:
A Universal Time-Varying Distributed H System of Degree 1. 371-380 - N. Gnanamalar David, K. G. Subramanian, D. Gnanaraj Thomas:
A Note on Graph Splicing Languages. 381-390
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