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last update; 2022.04.20

Download of gene coexpression data

[Method] [Data format] [Zenodo]

Columns:   *               
Rows:        
Icon Species Tax ID Coexpression version DB version Release date #GeneChips or #runs Method** Gene correlation table Gene expression table
(Microarray: RMA, gene centered)
(RNAseq: quantile, gene centered)		 KEGG name KEGG score
Arabidopsis 3702 Ath-u.c3-0 11.1 2022.04.20 27427 u22 Ath-u.v22-04.G18957-S27427.combat_pca.subagging.ls.d.zip 1.3 GB (md5)  Ath-m.c9-0 Ath-r.c5-0 ath 7.759
Arabidopsis 3702 Ath-m.c9-0 11.0 2021.02.23 12686 m21 Ath-m.v21-01.G20819-S12686.combat_pca_subagging.ls.d.zip 1.6 GB (md5) Ath-m.c9-0.expression.combat.txt.zip 612.4 MB (md5) ath 6.361
Arabidopsis 3702 Ath-r.c5-0 11.0 2021.02.23 14741 r21 Ath-r.v21-01.G18957-S14741.combat_pca_subagging.ls.d.zip 1.3 GB (md5) Ath-r.c5-0.expression.combat.txt.zip 601.9 MB (md5) ath 7.275
Field mustard 3711 Bra-r.c4-0 11.0 2021.02.23 212 r21 Bra-r.v21-01.G26339-S212.combat_pca_subagging.ls.d.zip 2.6 GB (md5) Bra-r.c4-0.expression.combat.txt.zip 14.2 MB (md5) brp 6.944
Soybean 3847 Gma-u.c3-0 11.1 2022.04.20 2104 u22 Gma-u.v22-04.G33331-S2104.combat_pca.subagging.ls.d.zip 4.4 GB (md5)  Gma-m.c5-0 Gma-r.c5-0 gmx 5.304
Soybean 3847 Gma-m.c5-0 11.0 2021.02.23 1022 m21 Gma-m.v21-01.G15746-S1022.combat_pca_subagging.ls.d.zip 1016.5 MB (md5) Gma-m.c5-0.expression.combat.txt.zip 40.8 MB (md5) gmx 4.441
Soybean 3847 Gma-r.c5-0 11.0 2021.02.23 1082 r21 Gma-r.v21-01.G33331-S1082.combat_pca_subagging.ls.d.zip 4.3 GB (md5) Gma-r.c5-0.expression.combat.txt.zip 88.9 MB (md5) gmx 5.128
Medicago 3880 Mtr-u.c3-0 11.1 2022.04.20 1090 u22 Mtr-u.v22-04.G22252-S1090.combat_pca.subagging.ls.d.zip 2.0 GB (md5)  Mtr-m.c5-0 Mtr-r.c3-0 mtr 6.059
Medicago 3880 Mtr-m.c5-0 11.0 2021.02.23 780 m21 Mtr-m.v21-01.G20376-S780.combat_pca_subagging.ls.d.zip 1.6 GB (md5) Mtr-m.c5-0.expression.combat.txt.zip 40.2 MB (md5) mtr 5.954
Medicago 3880 Mtr-r.c3-0 11.0 2021.02.23 310 r21 Mtr-r.v21-01.G22252-S310.combat_pca_subagging.ls.d.zip 1.9 GB (md5) Mtr-r.c3-0.expression.combat.txt.zip 16.6 MB (md5) mtr 5.404
Rice 39947 Osa-u.c3-0 11.1 2022.04.20 2553 u22 Osa-u.v22-04.G22698-S2553.combat_pca.subagging.ls.d.zip 2.0 GB (md5)  Osa-m.c8-0 Osa-r.c4-0 osa 5.476
Rice 39947 Osa-m.c8-0 11.0 2021.02.23 1775 m21 Osa-m.v21-01.G19867-S1775.combat_pca_subagging.ls.d.zip 1.5 GB (md5) Osa-m.c8-0.expression.combat.txt.zip 89.0 MB (md5) osa 5.457
Rice 39947 Osa-r.c4-0 11.0 2021.02.23 778 r21 Osa-r.v21-01.G22698-S778.combat_pca_subagging.ls.d.zip 1.9 GB (md5) Osa-r.c4-0.expression.combat.txt.zip 43.2 MB (md5) osa 4.719
Poplar 3697, 3694 Ppo-u.c3-0 11.1 2022.04.20 1205 u22 Ppo-u.v22-04.G21727-S1205.combat_pca.subagging.ls.d.zip 1.9 GB (md5)  Ppo-m.c4-0 Ppo-r.c2-0 pop 4.596
Poplar 3697, 3694 Ppo-m.c4-0 11.0 2021.02.23 557 m21 Ppo-m.v21-01.G21910-S557.combat_pca_subagging.ls.d.zip 1.8 GB (md5) Ppo-m.c4-0.expression.combat.txt.zip 31.1 MB (md5) pop 5.239
Poplar 3697, 3694 Ppo-r.c2-0 11.0 2021.02.23 648 r21 Ppo-r.v21-01.G21727-S648.combat_pca_subagging.ls.d.zip 1.8 GB (md5) Ppo-r.c2-0.expression.combat.txt.zip 34.0 MB (md5) pop 4.211
Tomato 4081 Sly-u.c3-0 11.1 2022.04.20 1141 u22 Sly-u.v22-04.G20073-S1141.combat_pca.subagging.ls.d.zip 1.6 GB (md5)  Sly-m.c5-0 Sly-r.c4-0 sly 6.022
Tomato 4081 Sly-m.c5-0 11.0 2021.02.23 392 m21 Sly-m.v21-01.G5721-S392.combat_pca_subagging.ls.d.zip 137.0 MB (md5) Sly-m.c5-0.expression.combat.txt.zip 5.9 MB (md5) sly 5.603
Tomato 4081 Sly-r.c4-0 11.0 2021.02.23 749 r21 Sly-r.v21-01.G20073-S749.combat_pca_subagging.ls.d.zip 1.5 GB (md5) Sly-r.c4-0.expression.combat.txt.zip 36.2 MB (md5) sly 6.023
Grape 29760 Vvi-u.c3-0 11.1 2022.04.20 1493 u22 Vvi-u.v22-04.G17304-S1493.combat_pca.subagging.ls.d.zip 1.2 GB (md5)  Vvi-m.c5-0 Vvi-r.c3-0 vvi 4.394
Grape 29760 Vvi-m.c5-0 11.0 2021.02.23 258 m21 Vvi-m.v21-01.G9421-S258.combat_pca_subagging.ls.d.zip 363.4 MB (md5) Vvi-m.c5-0.expression.combat.txt.zip 6.2 MB (md5) vvi 4.001
Grape 29760 Vvi-r.c3-0 11.0 2021.02.23 1235 r21 Vvi-r.v21-01.G17304-S1235.combat_pca_subagging.ls.d.zip 1.2 GB (md5) Vvi-r.c3-0.expression.combat.txt.zip 53.7 MB (md5) vvi 4.166
Maize 4577 Zma-u.c3-0 11.1 2022.04.20 5017 u22 Zma-u.v22-04.G26131-S5017.combat_pca.subagging.ls.d.zip 2.8 GB (md5)  Zma-m.c5-0 Zma-r.c4-0 zma 5.855
Maize 4577 Zma-m.c5-0 11.0 2021.02.23 606 m21 Zma-m.v21-01.G10777-S606.combat_pca_subagging.ls.d.zip 486.7 MB (md5) Zma-m.c5-0.expression.combat.txt.zip 16.7 MB (md5) zma 4.419
Maize 4577 Zma-r.c4-0 11.0 2021.02.23 4411 r21 Zma-r.v21-01.G26131-S4411.combat_pca_subagging.ls.d.zip 2.7 GB (md5) Zma-r.c4-0.expression.combat.txt.zip 275.9 MB (md5) zma 5.774