Maya Petersen
Professor
Computational Precision Heal
Chancellor/EVC/FAS

Publications (205)

Top publication keywords:
Anti-Retroviral AgentsCausalityMachine LearningModels, StatisticalCriminal LawPre-Exposure ProphylaxisCommunity Health ServicesAnti-HIV AgentsViral LoadBiostatisticsKenyaRural PopulationLikelihood FunctionsHIV InfectionsUganda

• Cost-effectiveness of leveraging existing HIV primary health systems and community health workers for hypertension screening and treatment in Africa: An individual-based modeling study.
  PLoS medicine 2025 Hickey MD, Ayieko J, Kabami J, Owaraganise A, Kakande E, Ogachi S, Aoko CI, Wafula EM, Sang N, Sunday H, Revill P, Bansi-Matharu L, Shade SB, Chamie G, Balzer LB, Petersen ML, Havlir DV, Kamya MR, …
• Fostering public health and academic partnerships during and beyond a public health emergency: lessons learned from COVID-19.
  American journal of epidemiology 2025 León TM, White LA, Spindler H, Schwab J, Petersen ML, Vargo J, Wheeler W, Shete PB, Jain S, Watt J, Pan ES, Kilpatrick AM
• Community Perspectives on Optimizing Community Health Volunteer Roles for HIV Prevention Services in Kenya and Uganda.
  AIDS patient care and STDs 2025 Akatukwasa C, Johnson-Peretz J, Atwine F, Arunga TMO, Onyango A, Owino L, Kamya MR, Petersen ML, Chamie G, Kakande E, Kabami J, Havlir D, Ayieko J, Camlin CS
• Cost-effectiveness of leveraging existing HIV primary health systems and community health workers for hypertension screening and treatment in Africa: an individual-based modelling study.
  medRxiv : the preprint server for health sciences 2024 Hickey MD, Ayieko J, Kabami J, Owaraganise A, Kakande E, Ogachi S, Aoko CI, Wafula E, Sang N, Sunday H, Revill P, Bansi-Matharu L, Shade SB, Chamie G, Balzer LB, Petersen M, Havlir DV, Kamya MR, …
• Dynamic choice HIV prevention with cabotegravir long-acting injectable in rural Uganda and Kenya: a randomised trial extension.
  The lancet. HIV 2024 Kamya MR, Balzer LB, Ayieko J, Kabami J, Kakande E, Chamie G, Sutter N, Sunday H, Litunya J, Schwab J, Schrom J, Bacon M, Koss CA, Rinehart AR, Petersen M, Havlir DV, SEARCH Consortium

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• Dipstick Leukocyturia as a Kidney Damage Biomarker in Rural Uganda and Kenya.
  Kidney medicine 2024 Mohamed S, Hsu CY, Charlebois ED, Kabami J, Atukunda M, Ayieko J, Orori G, Hickey MD, Petersen M, Kamya MR, Havlir D, Estrella MM, Muiru AN
• The Causal Roadmap and Simulations to Improve the Rigor and Reproducibility of Real-data Applications.
  Epidemiology (Cambridge, Mass.) 2024 Nance N, Petersen ML, van der Laan M, Balzer LB
• Client experiences with "Dynamic Choice Prevention," a model for flexible patient-centred HIV prevention delivery in rural Eastern Africa.
  Journal of the International AIDS Society 2024 Camlin CS, Arunga T, Johnson-Peretz J, Akatukwasa C, Atwine F, Onyango A, Owino L, Kamya MR, Petersen ML, Chamie G, Kakande E, Kabami J, Balzer LB, Havlir DV, Ayieko J
• Illness Narratives Without the Illness: Biomedical HIV Prevention Narratives from East Africa.
  The Journal of medical humanities 2024 Johnson-Peretz J, Atwine F, Kamya MR, Ayieko J, Petersen ML, Havlir DV, Camlin CS
• Community-Wide Universal HIV Test and Treat Intervention Reduces Tuberculosis Transmission in Rural Uganda: A Cluster-Randomized Trial.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2024 Marquez C, Atukunda M, Nugent J, Charlebois ED, Chamie G, Mwangwa F, Ssemmondo E, Kironde J, Kabami J, Owaraganise A, Kakande E, Ssekaynzi B, Abbott R, Ayieko J, Ruel T, Kwariisima D, Kamya M, …
• Incident Tuberculosis Infection is Associated with Alcohol use in Adults in Rural Uganda.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2024 Abbott R, Landsiedel K, Atukunda M, Puryear SB, Chamie G, Hahn JA, Mwangwa F, Kakande E, Petersen ML, Havlir DV, Charlebois E, Balzer LB, Kamya MR, Marquez C
• Integrated HIV, diabetes, and hypertension care in sub-Saharan Africa.
  Lancet (London, England) 2024 Havlir D, Kamya MR, Petersen M
• Exploring HIV risk perception mechanisms among youth in a test-and-treat trial in Kenya and Uganda.
  PLOS global public health 2024 Owino L, Johnson-Peretz J, Lee J, Getahun M, Coppock-Pector D, Maeri I, Onyango A, Cohen CR, Bukusi EA, Kabami J, Ayieko J, Petersen M, Kamya MR, Charlebois E, Havlir D, Camlin CS
• Randomized Trial of Dynamic Choice HIV Prevention at Antenatal and Postnatal Care Clinics in Rural Uganda and Kenya.
  Journal of acquired immune deficiency syndromes (1999) 2024 Kabami J, Koss CA, Sunday H, Biira E, Nyabuti M, Balzer LB, Gupta S, Chamie G, Ayieko J, Kakande E, Bacon MC, Havlir D, Kamya MR, Petersen M, SEARCH Study Team
• Experiences and perceptions of conditional cash incentive provision and cessation among people with HIV for care engagement: A qualitative study.
  Research square 2024 Giordano J, Lewis-Kulzer J, Montoya L, Akama E, Adhiambo HF, Nyadieka E, Iguna S, Bukusi EA, Odeny T, Camlin CS, Thirumurthy H, Petersen M, Geng EH
• Adaptive sequential surveillance with network and temporal dependence.
  Biometrics 2024 Malenica I, Coyle JR, van der Laan MJ, Petersen ML
• Clinical Implications of HIV Treatment and Prevention for Polygamous Families in Kenya and Uganda: "My Co-Wife Is the One Who Used to Encourage Me".
  Journal of the International Association of Providers of AIDS Care 2024 Johnson-Peretz J, Onyango A, Gutin SA, Balzer L, Akatukwasa C, Owino L, Arunga TMO, Atwine F, Petersen M, Kamya M, Ayieko J, Ruel T, Havlir D, Camlin CS
• A community-based dynamic choice model for HIV prevention improves PrEP and PEP coverage in rural Uganda and Kenya: a cluster randomized trial.
  Journal of the International AIDS Society 2023 Kakande ER, Ayieko J, Sunday H, Biira E, Nyabuti M, Agengo G, Kabami J, Aoko C, Atuhaire HN, Sang N, Owaranganise A, Litunya J, Mugoma EW, Chamie G, Peng J, Schrom J, Bacon MC, Kamya MR, Havlir DV, …
• Effect of a brief alcohol counselling intervention on HIV viral suppression and alcohol use among persons with HIV and unhealthy alcohol use in Uganda and Kenya: a randomized controlled trial.
  Journal of the International AIDS Society 2023 Puryear SB, Mwangwa F, Opel F, Chamie G, Balzer LB, Kabami J, Ayieko J, Owaraganise A, Kakande E, Agengo G, Bukusi E, Kabageni S, Omoding D, Bacon M, Schrom J, Woolf-King S, Petersen ML, Havlir DV, …
• Randomized Trial of a "Dynamic Choice" Patient-Centered Care Intervention for Mobile Persons With HIV in East Africa.
  Journal of acquired immune deficiency syndromes (1999) 2023 Ayieko J, Balzer LB, Inviolata C, Kakande E, Opel F, Wafula EM, Kabami J, Owaraganise A, Mwangwa F, Nakato H, Bukusi EA, Camlin CS, Charlebois ED, Bacon MC, Petersen ML, Kamya MR, Havlir DV, Chamie G,…
• A youth-centred approach to improving engagement in HIV services: human-centred design methods and outcomes in a research trial in Kisumu County, Kenya.
  BMJ global health 2023 Akama EO, Beres LK, Kulzer JL, Ontuga G, Adhiambo H, Bushuru S, Nyagesoa E, Osoro J, Opondo I, Sang N, Oketch B, Nyanga J, Osongo CO, Nyandieka E, Ododa E, Omondi E, Ochieng F, Owino C, Odeny T, Kwena…
• Improving care engagement for mobile people living with HIV in rural western Kenya.
  PloS one 2023 Ayieko J, Charlebois ED, Maeri I, Owino L, Thorp M, Bukusi EA, Petersen ML, Kamya MR, Havlir DV, Camlin CS
• Geographic Mobility and HIV Care Engagement among People Living with HIV in Rural Kenya and Uganda.
  Tropical medicine and infectious disease 2023 Ayieko J, Thorp M, Getahun M, Gandhi M, Maeri I, Gutin SA, Okiring J, Kamya MR, Bukusi EA, Charlebois ED, Petersen M, Havlir DV, Camlin CS, Murnane PM
• Case study of semaglutide and cardiovascular outcomes: An application of the Causal Roadmap to a hybrid design for augmenting an RCT control arm with real-world data.
  Journal of clinical and translational science 2023 Dang LE, Fong E, Tarp JM, Clemmensen KKB, Ravn H, Kvist K, Buse JB, van der Laan M, Petersen M
• Dynamic choice HIV prevention intervention at outpatient departments in rural Kenya and Uganda.
  AIDS (London, England) 2023 Koss CA, Ayieko J, Kabami J, Balzer LB, Kakande E, Sunday H, Nyabuti M, Wafula E, Shade SB, Biira E, Opel F, Atuhaire HN, Okochi H, Ogachi S, Gandhi M, Bacon MC, Bukusi EA, Chamie G, Petersen ML, …
• A causal roadmap for generating high-quality real-world evidence.
  Journal of clinical and translational science 2023 Dang LE, Gruber S, Lee H, Dahabreh IJ, Stuart EA, Williamson BD, Wyss R, Díaz I, Ghosh D, Kiciman E, Alemayehu D, Hoffman KL, Vossen CY, Huml RA, Ravn H, Kvist K, Pratley R, Shih MC, Pennello G, …
• Universal HIV Testing and Treatment With Patient-Centered Care Improves ART Uptake and Viral Suppression Among Adults Reporting Hazardous Alcohol Use in Uganda and Kenya.
  Journal of acquired immune deficiency syndromes (1999) 2023 Puryear SB, Ayieko J, Hahn JA, Mucunguzi A, Owaraganise A, Schwab J, Balzer LB, Kwarisiima D, Charlebois ED, Cohen CR, Bukusi EA, Petersen ML, Havlir DV, Kamya MR, Chamie G
• Population-level viremia predicts HIV incidence at the community level across the Universal Testing and Treatment Trials in eastern and southern Africa.
  PLOS global public health 2023 Larmarange J, Bachanas P, Skalland T, Balzer LB, Iwuji C, Floyd S, Mills LA, Pillay D, Havlir D, Kamya MR, Ayles H, Wirth K, Dabis F, Hayes R, Petersen M, UT³C consortium
• San Francisco's Citywide COVID-19 Response: Strategies to Reduce COVID-19 Severity and Health Disparities, March 2020 Through May 2022.
  Public health reports (Washington, D.C. : 1974) 2023 Sachdev DD, Petersen M, Havlir DV, Schwab J, Enanoria WTA, Nguyen TQ, Mercer MP, Scheer S, Bennett A, Tenner AG, Marks JD, Bobba N, Philip S, Colfax G
• Uptake of a patient-centred dynamic choice model for HIV prevention in rural Kenya and Uganda: SEARCH SAPPHIRE study.
  Journal of the International AIDS Society 2023 Kabami J, Kakande E, Chamie G, Balzer LB, Petersen ML, Camlin CS, Nyabuti M, Koss CA, Bukusi EA, Kamya MR, Havlir DV, Ayieko J
• Defining and estimating effects in cluster randomized trials: A methods comparison.
  Statistics in medicine 2023 Benitez A, Petersen ML, van der Laan MJ, Santos N, Butrick E, Walker D, Ghosh R, Otieno P, Waiswa P, Balzer LB
• Weight Change Following Switch to Dolutegravir for HIV Treatment in Rural Kenya During Country Roll-Out.
  Journal of acquired immune deficiency syndromes (1999) 2023 Hickey MD, Wafula E, Ogachi SM, Ojwando H, Orori G, Adede RO, Garraza LG, Petersen ML, Havlir DV, Balzer LB, Ayieko J
• Two-Stage TMLE to reduce bias and improve efficiency in cluster randomized trials.
  Biostatistics (Oxford, England) 2023 Balzer LB, van der Laan M, Ayieko J, Kamya M, Chamie G, Schwab J, Havlir DV, Petersen ML
• Monitoring SARS-CoV-2 incidence and seroconversion among university students and employees: a longitudinal cohort study in California, June-August 2020.
  BMJ open 2023 Hunter LA, Wyman S, Packel LJ, Facente SN, Li Y, Harte A, Nicolette G, IGI SARS-CoV-2 Testing Consortium, Di Germanio C, Busch MP, Reingold AL, Petersen ML
• Adaptive Strategies for Retention in Care among Persons Living with HIV.
  NEJM evidence 2023 Geng EH, Odeny TA, Montoya LM, Iguna S, Kulzer JL, Adhiambo HF, Eshun-Wilson I, Akama E, Nyandieka E, Guzé MA, Shade S, Packel L, Fox B, Camlin C, Thirumurthy H, Lyons C, Bukusi EA, Petersen ML
• Field assessment of BinaxNOW antigen tests as COVID-19 treatment entry point at a community testing site in San Francisco during evolving omicron surges.
  PloS one 2023 Schrom J, Marquez C, Wang CY, Saxena A, Mitchell AM, Ribeiro S, Pilarowski G, Nakamura R, Rojas S, Black D, Contreras Oseguera MG, Diaz EC, Payan J, Rojas S, Jones D, Tulier-Laiwa V, Zavaleta A, …
• Adapt for Adolescents: Protocol for a sequential multiple assignment randomized trial to improve retention and viral suppression among adolescents and young adults living with HIV in Kenya.
  Contemporary clinical trials 2023 Abuogi LL, Kulzer JL, Akama E, Odeny TA, Eshun-Wilson I, Petersen M, Shade SB, Montoya LM, Beres LK, Iguna S, Adhiambo HF, Osoro J, Opondo I, Sang N, Kwena Z, Bukusi EA, Geng EH
• The Association Between Social Network Characteristics and Tuberculosis Infection Among Adults in 9 Rural Ugandan Communities.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2023 Marquez C, Chen Y, Atukunda M, Chamie G, Balzer LB, Kironde J, Ssemmondo E, Mwangwa F, Kabami J, Owaraganise A, Kakande E, Abbott R, Ssekyanzi B, Koss C, Kamya MR, Charlebois ED, Havlir DV, Petersen …
• Efficient and robust approaches for analysis of sequential multiple assignment randomized trials: Illustration using the ADAPT-R trial.
  Biometrics 2022 Montoya LM, Kosorok MR, Geng EH, Schwab J, Odeny TA, Petersen ML
• Efficient targeted learning of heterogeneous treatment effects for multiple subgroups.
  Biometrics 2022 Wei W, Petersen M, van der Laan MJ, Zheng Z, Wu C, Wang J
• Effect of a one-time financial incentive on linkage to chronic hypertension care in Kenya and Uganda: A randomized controlled trial.
  PloS one 2022 Hickey MD, Owaraganise A, Sang N, Opel FJ, Mugoma EW, Ayieko J, Kabami J, Chamie G, Kakande E, Petersen ML, Balzer LB, Kamya MR, Havlir DV
• Reproducibility and implementation of a rapid, community-based COVID-19 "test and respond" model in low-income, majority-Latino communities in Northern California.
  PloS one 2022 Chamie G, Prado P, Oviedo Y, Vizcaíno T, Arechiga C, Marson K, Carrera O, Alvarado MJ, Corchado CG, Gomez M, Mochel M, de Leon I, Garibay KK, Durazo A, Young MT, Yen IH, Sauceda J, Rojas S, DeRisi J, …
• Providers' Attitudes and Experiences with Pre-Exposure Prophylaxis Implementation in a Population-Based Study in Kenya and Uganda.
  AIDS patient care and STDs 2022 Camlin CS, Getahun M, Koss CA, Owino L, Akatukwasa C, Itiakorit H, Onyango A, Bakanoma R, Atwine F, Maeri I, Ayieko J, Atukunda M, Owaraganise A, Mwangwa F, Sang N, Kabami J, Kaplan RL, Chamie G, …
• COVID-19 Symptoms and Duration of Rapid Antigen Test Positivity at a Community Testing and Surveillance Site During Pre-Delta, Delta, and Omicron BA.1 Periods.
  JAMA network open 2022 Marquez C, Kerkhoff AD, Schrom J, Rojas S, Black D, Mitchell A, Wang CY, Pilarowski G, Ribeiro S, Jones D, Payan J, Manganelli S, Rojas S, Lemus J, Jain V, Chamie G, Tulier-Laiwa V, Petersen M, DeRisi…
• Comparison of SARS-CoV-2 Reverse Transcriptase Polymerase Chain Reaction and BinaxNOW Rapid Antigen Tests at a Community Site During an Omicron Surge.
  Annals of internal medicine 2022 Schrom J, Marquez C, Petersen M, DeRisi J, Havlir D
• Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission Dynamics and Immune Responses in a Household of Vaccinated Persons.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 Liu J, Laurie MT, Rubio L, Vazquez SE, Sunshine S, Mitchell AM, Hapte-Selassie M, Mann SA, Pilarowski G, Black D, Marquez C, Rojas S, Lionakis MS, Petersen M, Whitman JD, Jain V, Anderson M, Havlir D,…
• Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa.
  Viruses 2022 Pujol-Hodge E, Salazar-Gonzalez JF, Ssemwanga D, Charlebois ED, Ayieko J, Grant HE, Liegler T, Atkins KE, Kaleebu P, Kamya MR, Petersen M, Havlir DV, Leigh Brown AJ
• Risky business: A mixed methods study of decision-making regarding COVID-19 risk at a public university in the United States.
  Frontiers in psychology 2022 Facente SN, De Zuzuarregui M, Frank D, Gomez-Aladino S, Muñoz A, Williamson S, Wang E, Hunter L, Packel L, Reingold A, Petersen M
• The optimal dynamic treatment rule superlearner: considerations, performance, and application to criminal justice interventions.
  The international journal of biostatistics 2022 Montoya LM, van der Laan MJ, Luedtke AR, Skeem JL, Coyle JR, Petersen ML
• Estimators for the value of the optimal dynamic treatment rule with application to criminal justice interventions.
  The international journal of biostatistics 2022 Montoya LM, van der Laan MJ, Skeem JL, Petersen ML
• SARS-CoV-2 Variant Exposures Elicit Antibody Responses With Differential Cross-Neutralization of Established and Emerging Strains Including Delta and Omicron.
  The Journal of infectious diseases 2022 Laurie MT, Liu J, Sunshine S, Peng J, Black D, Mitchell AM, Mann SA, Pilarowski G, Zorn KC, Rubio L, Bravo S, Marquez C, Sabatino JJ, Mittl K, Petersen M, Havlir D, DeRisi J
• Two or more significant life-events in 6-months are associated with lower rates of HIV treatment and virologic suppression among youth with HIV in Uganda and Kenya.
  AIDS care 2022 Mwangwa F, Charlebois ED, Ayieko J, Olio W, Black D, Peng J, Kwarisiima D, Kabami J, Balzer LB, Petersen ML, Kapogiannis B, Kamya MR, Havlir DV, Ruel TD
• Integrating Rapid Diabetes Screening Into a Latinx Focused Community-Based Low-Barrier COVID-19 Testing Program.
  JAMA network open 2022 Kerkhoff AD, Rojas S, Black D, Ribeiro S, Rojas S, Valencia R, Lemus J, Payan J, Schrom J, Jones D, Manganelli S, Bandi S, Chamie G, Tulier-Laiwa V, Petersen M, Havlir D, Marquez C
• Cost-effectiveness of easy-access, risk-informed oral pre-exposure prophylaxis in HIV epidemics in sub-Saharan Africa: a modelling study.
  The lancet. HIV 2022 Phillips AN, Bershteyn A, Revill P, Bansi-Matharu L, Kripke K, Boily MC, Martin-Hughes R, Johnson LF, Mukandavire Z, Jamieson L, Meyer-Rath G, Hallett TB, Ten Brink D, Kelly SL, Nichols BE, Bendavid E…
• PEP for HIV prevention: are we missing opportunities to reduce new infections?
  Journal of the International AIDS Society 2022 Ayieko J, Petersen ML, Kamya MR, Havlir DV
• Viral Load Among Vaccinated and Unvaccinated, Asymptomatic and Symptomatic Persons Infected With the SARS-CoV-2 Delta Variant.
  Open forum infectious diseases 2022 Acharya CB, Schrom J, Mitchell AM, Coil DA, Marquez C, Rojas S, Wang CY, Liu J, Pilarowski G, Solis L, Georgian E, Belafsky S, Petersen M, DeRisi J, Michelmore R, Havlir D
• Comparison of SARS-CoV-2 Reverse Transcriptase Polymerase Chain Reaction and BinaxNOW Rapid Antigen Tests at a Community Site During an Omicron Surge : A Cross-Sectional Study.
  Annals of internal medicine 2022 Schrom J, Marquez C, Pilarowski G, Wang CY, Mitchell A, Puccinelli R, Black D, Rojas S, Ribeiro S, Tulier-Laiwa V, Martinez J, Payan J, Rojas S, Jones D, Martinez D, Nakamura R, Chamie G, Jain V, …
• Attitudes towards and experiences with economic incentives for engagement in HIV care and treatment: Qualitative insights from a randomized trial in Kenya.
  PLOS global public health 2022 Iguna S, Getahun M, Lewis-Kulzer J, Odhiambo G, Adhiambo F, Montoya L, Petersen ML, Bukusi E, Odeny T, Geng E, Camlin CS
• Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a Community-Based Testing Site in San Francisco.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 Peng J, Liu J, Mann SA, Mitchell AM, Laurie MT, Sunshine S, Pilarowski G, Ayscue P, Kistler A, Vanaerschot M, Li LM, McGeever A, Chow ED, Marquez C, Nakamura R, Rubio L, Chamie G, Jones D, Jacobo J, …
• Effect of universal HIV testing and treatment on socioeconomic wellbeing in rural Kenya and Uganda: a cluster-randomised controlled trial.
  The Lancet. Global health 2022 Jakubowski A, Kabami J, Balzer LB, Ayieko J, Charlebois ED, Owaraganise A, Marquez C, Clark TD, Black D, Shade SB, Chamie G, Cohen CR, Bukusi EA, Kamya MR, Petersen M, Havlir DV, Thirumurthy H
• SARS-CoV-2 variant exposures elicit antibody responses with differential cross-neutralization of established and emerging strains including Delta and Omicron.
  medRxiv : the preprint server for health sciences 2021 Laurie MT, Liu J, Sunshine S, Peng J, Black D, Mitchell AM, Mann SA, Pilarowski G, Zorn KC, Rubio L, Bravo S, Marquez C, Sabatino JJ, Mittl K, Petersen M, Havlir D, DeRisi J
• High Parental Vaccine Motivation at a Neighborhood-Based Vaccine and Testing Site Serving a Predominantly Latinx Community.
  Health equity 2021 Naso J, Rojas S, Peng J, Marquez C, Contreras M, Castellanos E, Rojas S, Rubio L, Jones D, Jacobo J, Black D, Tulier-Laiwa V, Martinez J, Chamie G, Pilarowski G, DeRisi J, Havlir D, Petersen M
• SARS-CoV-2 vaccine boosters: The time to act is now.
  PLoS medicine 2021 Petersen M, Schwab J, Havlir DV
• Field Performance and Public Health Response Using the BinaxNOWTM Rapid Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antigen Detection Assay During Community-Based Testing.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Pilarowski G, Marquez C, Rubio L, Peng J, Martinez J, Black D, Chamie G, Jones D, Jacobo J, Tulier-Laiwa V, Rojas S, Rojas S, Cox C, Nakamura R, Petersen M, DeRisi J, Havlir DV
• SEARCH Human Immunodeficiency Virus (HIV) Streamlined Treatment Intervention Reduces Mortality at a Population Level in Men With Low CD4 Counts.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Kamya MR, Petersen ML, Kabami J, Ayieko J, Kwariisima D, Sang N, Clark TD, Schwab J, Charlebois ED, Cohen CR, Bukusi EA, Peng J, Jain V, Chen YH, Chamie G, Balzer LB, Havlir DV
• A multi-component, community-based strategy to facilitate COVID-19 vaccine uptake among Latinx populations: From theory to practice.
  PloS one 2021 Marquez C, Kerkhoff AD, Naso J, Contreras MG, Castellanos Diaz E, Rojas S, Peng J, Rubio L, Jones D, Jacobo J, Rojas S, Gonzalez R, Fuchs JD, Black D, Ribeiro S, Nossokoff J, Tulier-Laiwa V, Martinez …
• Effect of a patient-centered hypertension delivery strategy on all-cause mortality: Secondary analysis of SEARCH, a community-randomized trial in rural Kenya and Uganda.
  PLoS medicine 2021 Hickey MD, Ayieko J, Owaraganise A, Sim N, Balzer LB, Kabami J, Atukunda M, Opel FJ, Wafula E, Nyabuti M, Brown L, Chamie G, Jain V, Peng J, Kwarisiima D, Camlin CS, Charlebois ED, Cohen CR, Bukusi EA…
• Feasibility and effectiveness of daily temperature screening to detect COVID-19 in a prospective cohort at a large public university.
  BMC public health 2021 Facente SN, Hunter LA, Packel LJ, Li Y, Harte A, Nicolette G, McDevitt S, Petersen M, Reingold AL
• Outcomes Associated With Social Distancing Policies in St Louis, Missouri, During the Early Phase of the COVID-19 Pandemic.
  JAMA network open 2021 Geng EH, Schwab J, Foraker R, Fox B, Hoehner CM, Schootman M, Mody A, Powderly W, Yount B, Woeltje K, Petersen M
• Invited Commentary: Machine Learning in Causal Inference-How Do I Love Thee? Let Me Count the Ways.
  American journal of epidemiology 2021 Balzer LB, Petersen ML
• Predicting HIV Incidence in the SEARCH Trial: A Mathematical Modeling Study.
  Journal of acquired immune deficiency syndromes (1999) 2021 Jewell BL, Balzer LB, Clark TD, Charlebois ED, Kwarisiima D, Kamya MR, Havlir DV, Petersen ML, Bershteyn A
• Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisco.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Chamie G, Marquez C, Crawford E, Peng J, Petersen M, Schwab D, Schwab J, Martinez J, Jones D, Black D, Gandhi M, Kerkhoff AD, Jain V, Sergi F, Jacobo J, Rojas S, Tulier-Laiwa V, Gallardo-Brown T, Appa…
• Population HIV viral load metrics for community health.
  The lancet. HIV 2021 Jain V, Petersen M, Havlir DV
• Social Networks and HIV Care Outcomes in Rural Kenya and Uganda.
  Epidemiology (Cambridge, Mass.) 2021 Chen YT, Brown L, Chamie G, Kwarisiima D, Ayieko J, Kabami J, Charlebois E, Clark T, Kamya M, Havlir DV, Petersen ML, Balzer LB
• Uptake and outcomes of a novel community-based HIV post-exposure prophylaxis (PEP) programme in rural Kenya and Uganda.
  Journal of the International AIDS Society 2021 Ayieko J, Petersen ML, Kabami J, Mwangwa F, Opel F, Nyabuti M, Charlebois ED, Peng J, Koss CA, Balzer LB, Chamie G, Bukusi EA, Kamya MR, Havlir DV
• Launching a saliva-based SARS-CoV-2 surveillance testing program on a university campus.
  PloS one 2021 Ehrenberg AJ, Moehle EA, Brook CE, Doudna Cate AH, Witkowsky LB, Sachdeva R, Hirsh A, Barry K, Hamilton JR, Lin-Shiao E, McDevitt S, Valentin-Alvarado L, Letourneau KN, Hunter L, Keller A, Pestal K, …
• Dimensions of HIV-related stigma in rural communities in Kenya and Uganda at the start of a large HIV 'test and treat' trial.
  PloS one 2021 Akatukwasa C, Getahun M, El Ayadi AM, Namanya J, Maeri I, Itiakorit H, Owino L, Sanyu N, Kabami J, Ssemmondo E, Sang N, Kwarisiima D, Petersen ML, Charlebois ED, Chamie G, Clark TD, Cohen CR, Kamya MR…
• Costs of integrating hypertension care into HIV care in rural East African clinics.
  AIDS (London, England) 2021 Shade SB, Osmand T, Kwarisiima D, Brown LB, Luo A, Mwebaza B, Mwesigye AR, Kwizera E, Imukeka H, Mwanga F, Ayieko J, Owaraganise A, Bukusi EA, Cohen CR, Charlebois ED, Black D, Clark TD, Petersen ML, …
• High Likelihood of Accepting COVID-19 Vaccine in a Latinx Community at High SARS-CoV-2 Risk in San Francisco.
  Open forum infectious diseases 2021 Peng J, Marquez C, Rubio L, Chamie G, Jones D, Jacobo J, Rojas S, Rojas S, Tulier-Laiwa V, Black D, Martinez J, Pilarowski G, Cox C, Derisi J, Havlir D, Petersen M
• Performance Characteristics of a Rapid Severe Acute Respiratory Syndrome Coronavirus 2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco.
  The Journal of infectious diseases 2021 Pilarowski G, Lebel P, Sunshine S, Liu J, Crawford E, Marquez C, Rubio L, Chamie G, Martinez J, Peng J, Black D, Wu W, Pak J, Laurie MT, Jones D, Miller S, Jacobo J, Rojas S, Rojas S, Nakamura R, …
• Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco.
  medRxiv : the preprint server for health sciences 2021 Peng J, Mann SA, Mitchell AM, Liu J, Laurie MT, Sunshine S, Pilarowski G, Ayscue P, Kistler A, Vanaerschot M, Li LM, McGeever A, Chow ED, Team I, Marquez C, Nakamura R, Rubio L, Chamie G, Jones D, …
• HIV incidence after pre-exposure prophylaxis initiation among women and men at elevated HIV risk: A population-based study in rural Kenya and Uganda.
  PLoS medicine 2021 Koss CA, Havlir DV, Ayieko J, Kwarisiima D, Kabami J, Chamie G, Atukunda M, Mwinike Y, Mwangwa F, Owaraganise A, Peng J, Olilo W, Snyman K, Awuonda B, Clark TD, Black D, Nugent J, Brown LB, Marquez C,…
• Characteristics of HIV seroconverters in the setting of universal test and treat: Results from the SEARCH trial in rural Uganda and Kenya.
  PloS one 2021 Nyabuti MN, Petersen ML, Bukusi EA, Kamya MR, Mwangwa F, Kabami J, Sang N, Charlebois ED, Balzer LB, Schwab JD, Camlin CS, Black D, Clark TD, Chamie G, Havlir DV, Ayieko J
• Taking Vaccine to Where the Virus Is-Equity and Effectiveness in Coronavirus Vaccinations.
  JAMA health forum 2021 Bibbins-Domingo K, Petersen M, Havlir D
• Piloting an integrated SARS-CoV-2 testing and data system for outbreak containment among college students: A prospective cohort study.
  PloS one 2021 Packel L, Reingold A, Hunter L, Facente S, Li Y, Harte A, Nicolette G, Urnov FD, Lu M, Petersen M, IGI Testing Consortium
• The COVID-19 Symptom to Isolation Cascade in a Latinx Community: A Call to Action.
  Open forum infectious diseases 2021 Rubio LA, Peng J, Rojas S, Rojas S, Crawford E, Black D, Jacobo J, Tulier-Laiwa V, Hoover CM, Martinez J, Jones D, Sachdev D, Cox C, Herrera E, Valencia R, Zurita KG, Chamie G, CLIAHUB Consortium, …
• Provider and Patient Perspectives of Rapid ART Initiation and Streamlined HIV Care: Qualitative Insights From Eastern African Communities.
  Journal of the International Association of Providers of AIDS Care 2021 Mwangwa F, Getahun M, Itiakorit H, Jain V, Ayieko J, Owino L, Akatukwasa C, Maeri I, Koss CA, Chamie G, Clark TD, Kabami J, Atukunda M, Kwarisiima D, Sang N, Bukusi EA, Kamya MR, Petersen ML, Cohen CR…
• Improved Viral Suppression With Streamlined Care in the SEARCH Study.
  Journal of acquired immune deficiency syndromes (1999) 2020 Hickey MD, Ayieko J, Kwarisiima D, Opel FJ, Owaraganise A, Balzer LB, Chamie G, Jain V, Peng J, Camlin C, Charlebois ED, Cohen CR, Bukusi EA, Kamya MR, Petersen ML, Havlir DV
• Machine Learning to Identify Persons at High-Risk of Human Immunodeficiency Virus Acquisition in Rural Kenya and Uganda.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Balzer LB, Havlir DV, Kamya MR, Chamie G, Charlebois ED, Clark TD, Koss CA, Kwarisiima D, Ayieko J, Sang N, Kabami J, Atukunda M, Jain V, Camlin CS, Cohen CR, Bukusi EA, Van Der Laan M, Petersen ML
• Pathways for reduction of HIV-related stigma: a model derived from longitudinal qualitative research in Kenya and Uganda.
  Journal of the International AIDS Society 2020 Camlin CS, Charlebois ED, Getahun M, Akatukwasa C, Atwine F, Itiakorit H, Bakanoma R, Maeri I, Owino L, Onyango A, Chamie G, Clark TD, Cohen CR, Kwarisiima D, Kabami J, Sang N, Kamya MR, Bukusi EA, …
• Performance characteristics of a rapid SARS-CoV-2 antigen detection assay at a public plaza testing site in San Francisco.
  medRxiv : the preprint server for health sciences 2020 Pilarowski G, Lebel P, Sunshine S, Liu J, Crawford E, Marquez C, Rubio L, Chamie G, Martinez J, Peng J, Black D, Wu W, Pak J, Laurie MT, Jones D, Miller S, Jacobo J, Rojas S, Rojas S, Nakamura R, …
• Evaluation of a novel community-based COVID-19 'Test-to-Care' model for low-income populations.
  PloS one 2020 Kerkhoff AD, Sachdev D, Mizany S, Rojas S, Gandhi M, Peng J, Black D, Jones D, Rojas S, Jacobo J, Tulier-Laiwa V, Petersen M, Martinez J, Chamie G, Havlir DV, Marquez C
• Far from MCAR: Obtaining Population-level Estimates of HIV Viral Suppression.
  Epidemiology (Cambridge, Mass.) 2020 Balzer LB, Ayieko J, Kwarisiima D, Chamie G, Charlebois ED, Schwab J, van der Laan MJ, Kamya MR, Havlir DV, Petersen ML
• Population-level viral suppression among pregnant and postpartum women in a universal test and treat trial.
  AIDS (London, England) 2020 Kabami J, Balzer LB, Saddiki H, Ayieko J, Kwarisiima D, Atukunda M, Charlebois ED, Clark TD, Koss CA, Ruel T, Bukusi EA, Cohen CR, Musoke P, Petersen ML, Havlir DV, Kamya MR, Chamie G
• Understanding Demand for PrEP and Early Experiences of PrEP Use Among Young Adults in Rural Kenya and Uganda: A Qualitative Study.
  AIDS and behavior 2020 Camlin CS, Koss CA, Getahun M, Owino L, Itiakorit H, Akatukwasa C, Maeri I, Bakanoma R, Onyango A, Atwine F, Ayieko J, Kabami J, Mwangwa F, Atukunda M, Owaraganise A, Kwarisiima D, Sang N, Bukusi EA, …
• Incidence, clinical outcomes, and transmission dynamics of severe coronavirus disease 2019 in California and Washington: prospective cohort study.
  BMJ (Clinical research ed.) 2020 Lewnard JA, Liu VX, Jackson ML, Schmidt MA, Jewell BL, Flores JP, Jentz C, Northrup GR, Mahmud A, Reingold AL, Petersen M, Jewell NP, Young S, Bellows J
• The epidemiology of chronic kidney disease (CKD) in rural East Africa: A population-based study.
  PloS one 2020 Muiru AN, Charlebois ED, Balzer LB, Kwarisiima D, Elly A, Black D, Okiror S, Kabami J, Atukunda M, Snyman K, Petersen M, Kamya M, Havlir D, Estrella MM, Hsu CY
• Associations between alcohol use and HIV care cascade outcomes among adults undergoing population-based HIV testing in East Africa.
  AIDS (London, England) 2020 Puryear SB, Balzer LB, Ayieko J, Kwarisiima D, Hahn JA, Charlebois ED, Clark TD, Cohen CR, Bukusi EA, Kamya MR, Petersen ML, Havlir DV, Chamie G
• Super learner analysis of real-time electronically monitored adherence to antiretroviral therapy under constrained optimization and comparison to non-differentiated care approaches for persons living with HIV in rural Uganda.
  Journal of the International AIDS Society 2020 Benitez AE, Musinguzi N, Bangsberg DR, Bwana MB, Muzoora C, Hunt PW, Martin JN, Haberer JE, Petersen ML
• Uptake, engagement, and adherence to pre-exposure prophylaxis offered after population HIV testing in rural Kenya and Uganda: 72-week interim analysis of observational data from the SEARCH study.
  The lancet. HIV 2020 Koss CA, Charlebois ED, Ayieko J, Kwarisiima D, Kabami J, Balzer LB, Atukunda M, Mwangwa F, Peng J, Mwinike Y, Owaraganise A, Chamie G, Jain V, Sang N, Olilo W, Brown LB, Marquez C, Zhang K, Ruel TD, …
• What do the Universal Test and Treat trials tell us about the path to HIV epidemic control?
  Journal of the International AIDS Society 2020 Havlir D, Lockman S, Ayles H, Larmarange J, Chamie G, Gaolathe T, Iwuji C, Fidler S, Kamya M, Floyd S, Moore J, Hayes R, Petersen M, Dabis F, (Universal Test, Treat Trials) UT3 Consortium
• The age-specific burden and household and school-based predictors of child and adolescent tuberculosis infection in rural Uganda.
  PloS one 2020 Marquez C, Atukunda M, Balzer LB, Chamie G, Kironde J, Ssemmondo E, Ruel TD, Mwangwa F, Tram KH, Clark TD, Kwarisiima D, Petersen M, Kamya MR, Charlebois ED, Havlir DV
• Hypertension testing and treatment in Uganda and Kenya through the SEARCH study: An implementation fidelity and outcome evaluation.
  PloS one 2020 Heller DJ, Balzer LB, Kazi D, Charlebois ED, Kwarisiima D, Mwangwa F, Jain V, Kotwani P, Chamie G, Cohen CR, Clark TD, Ayieko J, Byonanabye DM, Petersen M, Kamya MR, Havlir D, Kahn JG
• The Influence of Social Networks on Antiretroviral Therapy Initiation Among HIV-Infected Antiretroviral Therapy-Naive Youth in Rural Kenya and Uganda.
  Journal of acquired immune deficiency syndromes (1999) 2020 Brown LB, Balzer LB, Kabami J, Kwarisiima D, Sang N, Ayieko J, Chen Y, Chamie G, Charlebois ED, Camlin CS, Cohen CR, Bukusi E, Kamya MR, Moody J, Havlir DV, Petersen ML
• Personalized public health: An implementation research agenda for the HIV response and beyond.
  PLoS medicine 2019 Geng EH, Holmes CB, Moshabela M, Sikazwe I, Petersen ML
• Pre-exposure Prophylaxis (PrEP) Uptake Among Older Individuals in Rural Western Kenya.
  Journal of acquired immune deficiency syndromes (1999) 2019 Olilo WA, Petersen ML, Koss CA, Wafula E, Kwarisiima D, Kadede K, Clark TD, Cohen CR, Bukusi EA, Kamya MR, Charlebois ED, Havlir DV, Ayieko J, SEARCH Collaboration
• Understanding HIV Program Effects: A Structural Approach to Context Using the Transportability Framework.
  Journal of acquired immune deficiency syndromes (1999) 2019 Mehrotra ML, Petersen ML, Geng EH
• Reaching 90-90-90 in rural communities in East Africa: lessons from the Sustainable East Africa Research in Community Health Trial.
  Current opinion in HIV and AIDS 2019 Chamie G, Kamya MR, Petersen ML, Havlir DV
• Improved small-sample estimation of nonlinear cross-validated prediction metrics.
  Journal of the American Statistical Association 2019 Benkeser D, Petersen M, van der Laan MJ
• HIV Testing and Treatment with the Use of a Community Health Approach in Rural Africa.
  The New England journal of medicine 2019 Havlir DV, Balzer LB, Charlebois ED, Clark TD, Kwarisiima D, Ayieko J, Kabami J, Sang N, Liegler T, Chamie G, Camlin CS, Jain V, Kadede K, Atukunda M, Ruel T, Shade SB, Ssemmondo E, Byonanebye DM, …
• Predictors of isoniazid preventive therapy completion among HIV-infected patients receiving differentiated and non-differentiated HIV care in rural Uganda.
  AIDS care 2019 Tram KH, Mwangwa F, Chamie G, Atukunda M, Owaraganise A, Ayieko J, Jain V, Clark TD, Kwarisiima D, Petersen ML, Kamya MR, Charlebois ED, Havlir DV, Marquez C, SEARCH collaboration
• Gendered dimensions of population mobility associated with HIV across three epidemics in rural Eastern Africa.
  Health & place 2019 Camlin CS, Akullian A, Neilands TB, Getahun M, Bershteyn A, Ssali S, Geng E, Gandhi M, Cohen CR, Maeri I, Eyul P, Petersen ML, Havlir DV, Kamya MR, Bukusi EA, Charlebois ED
• Hypertension control in integrated HIV and chronic disease clinics in Uganda in the SEARCH study.
  BMC public health 2019 Kwarisiima D, Atukunda M, Owaraganise A, Chamie G, Clark T, Kabami J, Jain V, Byonanebye D, Mwangwa F, Balzer LB, Charlebois E, Kamya MR, Petersen M, Havlir DV, Brown LB
• Causal inference when counterfactuals depend on the proportion of all subjects exposed.
  Biometrics 2019 Miles CH, Petersen M, van der Laan MJ
• A Patient-Centered Multicomponent Strategy for Accelerated Linkage to Care Following Community-Wide HIV Testing in Rural Uganda and Kenya.
  Journal of acquired immune deficiency syndromes (1999) 2019 Ayieko J, Petersen ML, Charlebois ED, Brown LB, Clark TD, Kwarisiima D, Kamya MR, Cohen CR, Bukusi EA, Havlir DV, Van Rie A
• Distance to clinic is a barrier to PrEP uptake and visit attendance in a community in rural Uganda.
  Journal of the International AIDS Society 2019 Mayer CM, Owaraganise A, Kabami J, Kwarisiima D, Koss CA, Charlebois ED, Kamya MR, Petersen ML, Havlir DV, Jewell BL
• Does HIV Pre-Exposure Prophylaxis Modify the Effect of Partnership Characteristics on Condom Use? A Cross-Sectional Study of Sexual Partnerships Among Men Who Have Sex with Men in San Francisco, California.
  AIDS patient care and STDs 2019 Prescott MR, Hern J, Petersen M, Santos GM
• Double Robust Efficient Estimators of Longitudinal Treatment Effects: Comparative Performance in Simulations and a Case Study.
  The international journal of biostatistics 2019 Tran L, Yiannoutsos C, Wools-Kaloustian K, Siika A, van der Laan M, Petersen M
• Factors predictive of successful retention in care among HIV-infected men in a universal test-and-treat setting in Uganda and Kenya: A mixed methods analysis.
  PloS one 2019 Brown LB, Getahun M, Ayieko J, Kwarisiima D, Owaraganise A, Atukunda M, Olilo W, Clark T, Bukusi EA, Cohen CR, Kamya MR, Petersen ML, Charlebois ED, Havlir DV, Camlin CS
• Mobile, Population-wide, Hybrid HIV Testing Strategy Increases Number of Children Tested in Rural Kenya and Uganda.
  The Pediatric infectious disease journal 2018 Ayieko J, Chamie G, Balzer L, Kwarisiima D, Kabami J, Sang N, Cohen CR, Bukusi EA, Clark TD, Plenty A, Charlebois ED, Petersen M, Kamya M, Havlir DV, Ruel T
• Early Adopters of Human Immunodeficiency Virus Preexposure Prophylaxis in a Population-based Combination Prevention Study in Rural Kenya and Uganda.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Koss CA, Ayieko J, Mwangwa F, Owaraganise A, Kwarisiima D, Balzer LB, Plenty A, Sang N, Kabami J, Ruel TD, Black D, Camlin CS, Cohen CR, Bukusi EA, Clark TD, Charlebois ED, Petersen ML, Kamya MR, …
• Costs of streamlined HIV care delivery in rural Ugandan and Kenyan clinics in the SEARCH Studys.
  AIDS (London, England) 2018 Shade SB, Osmand T, Luo A, Aine R, Assurah E, Mwebaza B, Mwai D, Owaraganise A, Mwangwa F, Ayieko J, Black D, Brown LB, Clark TD, Kwarisiima D, Thirumurthy H, Cohen CR, Bukusi EA, Charlebois ED, …
• "Hurdles on the path to 90-90-90 and beyond": Qualitative analysis of barriers to engagement in HIV care among individuals in rural East Africa in the context of test-and-treat.
  PloS one 2018 Ayieko J, Brown L, Anthierens S, Van Rie A, Getahun M, Charlebois ED, Petersen ML, Clark TD, Kamya MR, Cohen CR, Bukusi EA, Havlir DV, Camlin CS
• High CD4 counts associated with better economic outcomes for HIV-positive adults and their HIV-negative household members in the SEARCH Trial.
  PloS one 2018 Jakubowski A, Snyman K, Kwarisiima D, Sang N, Burger R, Balzer L, Clark T, Chamie G, Shade S, Cohen C, Bukusi E, Charlebois E, Kamya M, Petersen M, Havlir D, Thirumurthy H
• A new approach to hierarchical data analysis: Targeted maximum likelihood estimation for the causal effect of a cluster-level exposure.
  Statistical methods in medical research 2018 Balzer LB, Zheng W, van der Laan MJ, Petersen ML
• Effect of a Patient-Centered Phone Call by a Clinical Officer at Time of HIV Testing on Linkage to Care in Rural Kenya.
  Open forum infectious diseases 2018 Ayieko J, Petersen ML, van Rie A, Wafula E, Opudo W, Clark TD, Kamya MR, Balzer LB, Cohen CR, Bukusi EA, Charlebois ED, Havlir DV
• Comparative assessment of five trials of universal HIV testing and treatment in sub-Saharan Africa.
  Journal of the International AIDS Society 2018 Perriat D, Balzer L, Hayes R, Lockman S, Walsh F, Ayles H, Floyd S, Havlir D, Kamya M, Lebelonyane R, Mills LA, Okello V, Petersen M, Pillay D, Sabapathy K, Wirth K, Orne-Gliemann J, Dabis F, …
• Isoniazid Preventive Therapy Completion in the Era of Differentiated HIV Care.
  Journal of acquired immune deficiency syndromes (1999) 2017 Tram KH, Mwangwa F, Atukunda M, Owaraganise A, Ayieko J, Plenty A, Kwariisima D, Clark TD, Petersen ML, Charlebois ED, Kamya MR, Chamie G, Havlir DV, Marquez C, SEARCH Collaboration
• Gaps in the Child Tuberculosis Care Cascade in 32 Rural Communities in Uganda and Kenya.
  Journal of clinical tuberculosis and other mycobacterial diseases 2017 Mwangwa F, Chamie G, Kwarisiima D, Ayieko J, Owaraganise A, Ruel TD, Plenty A, Tram KH, Clark TD, Cohen CR, Bukusi EA, Petersen M, Kamya MR, Charlebois ED, Havlir DV, Marquez C
• Redemption of the "spoiled identity:" the role of HIV-positive individuals in HIV care cascade interventions.
  Journal of the International AIDS Society 2017 Camlin CS, Charlebois ED, Geng E, Semitala F, Wallenta J, Getahun M, Kampiire L, Bukusi EA, Sang N, Kwarisiima D, Clark TD, Petersen ML, Kamya MR, Havlir DV
• Predictors of Retention in HIV Care Among Youth (15-24) in a Universal Test-and-Treat Setting in Rural Kenya.
  Journal of acquired immune deficiency syndromes (1999) 2017 Brown LB, Ayieko J, Mwangwa F, Owaraganise A, Kwarisiima D, Jain V, Ruel T, Clark T, Black D, Chamie G, Bukusi EA, Cohen CR, Kamya MR, Petersen ML, Charlebois ED, Havlir DV
• Specification of implementation interventions to address the cascade of HIV care and treatment in resource-limited settings: a systematic review.
  Implementation science : IS 2017 Hickey MD, Odeny TA, Petersen M, Neilands TB, Padian N, Ford N, Matthay Z, Hoos D, Doherty M, Beryer C, Baral S, Geng EH
• High rates of viral suppression in adults and children with high CD4+ counts using a streamlined ART delivery model in the SEARCH trial in rural Uganda and Kenya.
  Journal of the International AIDS Society 2017 Kwarisiima D, Kamya MR, Owaraganise A, Mwangwa F, Byonanebye DM, Ayieko J, Plenty A, Black D, Clark TD, Nzarubara B, Snyman K, Brown L, Bukusi E, Cohen CR, Geng EH, Charlebois ED, Ruel TD, Petersen ML…
• Rapid sociometric mapping of community health workers to identify opinion leaders using an SMS platform: a short report.
  Implementation science : IS 2017 Odeny TA, Petersen M, Muga CT, Lewis-Kulzer J, Bukusi EA, Geng EH
• Association of Implementation of a Universal Testing and Treatment Intervention With HIV Diagnosis, Receipt of Antiretroviral Therapy, and Viral Suppression in East Africa.
  JAMA 2017 Petersen M, Balzer L, Kwarsiima D, Sang N, Chamie G, Ayieko J, Kabami J, Owaraganise A, Liegler T, Mwangwa F, Kadede K, Jain V, Plenty A, Brown L, Lavoy G, Schwab J, Black D, van der Laan M, Bukusi EA…
• Constrained binary classification using ensemble learning: an application to cost-efficient targeted PrEP strategies.
  Statistics in medicine 2017 Zheng W, Balzer L, van der Laan M, Petersen M, SEARCH Collaboration
• Population levels and geographical distribution of HIV RNA in rural Ugandan and Kenyan communities, including serodiscordant couples: a cross-sectional analysis.
  The lancet. HIV 2016 Jain V, Petersen ML, Liegler T, Byonanebye DM, Kwarisiima D, Chamie G, Sang N, Black D, Clark TD, Ladai A, Plenty A, Kabami J, Ssemmondo E, Bukusi EA, Cohen CR, Charlebois ED, Kamya MR, Havlir DV, …
• Using observational data to emulate a randomized trial of dynamic treatment-switching strategies: an application to antiretroviral therapy.
  International journal of epidemiology 2016 Cain LE, Saag MS, Petersen M, May MT, Ingle SM, Logan R, Robins JM, Abgrall S, Shepherd BE, Deeks SG, John Gill M, Touloumi G, Vourli G, Dabis F, Vandenhende MA, Reiss P, van Sighem A, Samji H, Hogg …
• High levels of retention in care with streamlined care and universal test and treat in East Africa.
  AIDS (London, England) 2016 Brown LB, Havlir DV, Ayieko J, Mwangwa F, Owaraganise A, Kwarisiima D, Jain V, Ruel T, Clark T, Chamie G, Bukusi EA, Cohen CR, Kamya MR, Petersen ML, Charlebois ED, SEARCH Collaboration
• Evaluating the Impact of a HIV Low-Risk Express Care Task-Shifting Program: A Case Study of the Targeted Learning Roadmap.
  Epidemiologic methods 2016 Tran L, Yiannoutsos CT, Musick BS, Wools-Kaloustian KK, Siika A, Kimaiyo S, van der Laan MJ, Petersen M
• Implementation and Operational Research: Cost and Efficiency of a Hybrid Mobile Multidisease Testing Approach With High HIV Testing Coverage in East Africa.
  Journal of acquired immune deficiency syndromes (1999) 2016 Chang W, Chamie G, Mwai D, Clark TD, Thirumurthy H, Charlebois ED, Petersen M, Kabami J, Ssemmondo E, Kadede K, Kwarisiima D, Sang N, Bukusi EA, Cohen CR, Kamya M, Havlir DV, Kahn JG
• Implementation and Operational Research: Population-Based Active Tuberculosis Case Finding During Large-Scale Mobile HIV Testing Campaigns in Rural Uganda.
  Journal of acquired immune deficiency syndromes (1999) 2016 Ssemmondo E, Mwangwa F, Kironde JL, Kwarisiima D, Clark TD, Marquez C, Charlebois ED, Petersen ML, Kamya MR, Havlir DV, Chamie G, SEARCH Collaboration
• Increased adolescent HIV testing with a hybrid mobile strategy in Uganda and Kenya.
  AIDS (London, England) 2016 Kadede K, Ruel T, Kabami J, Ssemmondo E, Sang N, Kwarisiima D, Bukusi E, Cohen CR, Liegler T, Clark TD, Charlebois ED, Petersen ML, Kamya MR, Havlir DV, Chamie G, SEARCH team
• Adaptive pre-specification in randomized trials with and without pair-matching.
  Statistics in medicine 2016 Balzer LB, van der Laan MJ, Petersen ML, SEARCH Collaboration
• Differential respiratory health effects from the 2008 northern California wildfires: A spatiotemporal approach.
  Environmental research 2016 Reid CE, Jerrett M, Tager IB, Petersen ML, Mann JK, Balmes JR
• Population-Based Assessment of Hypertension Epidemiology and Risk Factors among HIV-Positive and General Populations in Rural Uganda.
  PloS one 2016 Kwarisiima D, Balzer L, Heller D, Kotwani P, Chamie G, Clark T, Ayieko J, Mwangwa F, Jain V, Byonanebye D, Petersen M, Havlir D, Kamya MR
• AUC-Maximizing Ensembles through Metalearning.
  The international journal of biostatistics 2016 LeDell E, van der Laan MJ, Petersen M
• Doubly Robust and Efficient Estimation of Marginal Structural Models for the Hazard Function.
  The international journal of biostatistics 2016 Zheng W, Petersen M, van der Laan MJ
• Targeted estimation and inference for the sample average treatment effect in trials with and without pair-matching.
  Statistics in medicine 2016 Balzer LB, Petersen ML, van der Laan MJ, SEARCH Collaboration
• A hybrid mobile approach for population-wide HIV testing in rural east Africa: an observational study.
  The lancet. HIV 2016 Chamie G, Clark TD, Kabami J, Kadede K, Ssemmondo E, Steinfeld R, Lavoy G, Kwarisiima D, Sang N, Jain V, Thirumurthy H, Liegler T, Balzer LB, Petersen ML, Cohen CR, Bukusi EA, Kamya MR, Havlir DV, …
• "How can I tell?" Consequences of HIV status disclosure among couples in eastern African communities in the context of an ongoing HIV "test-and-treat" trial.
  AIDS care 2016 Maeri I, El Ayadi A, Getahun M, Charlebois E, Akatukwasa C, Tumwebaze D, Itiakorit H, Owino L, Kwarisiima D, Ssemmondo E, Sang N, Kabami J, Clark TD, Petersen M, Cohen CR, Bukusi EA, Kamya M, Havlir D…
• Expectations about future health and longevity in Kenyan and Ugandan communities receiving a universal test-and-treat intervention in the SEARCH trial.
  AIDS care 2016 Thirumurthy H, Jakubowski A, Camlin C, Kabami J, Ssemmondo E, Elly A, Mwai D, Clark T, Cohen C, Bukusi E, Kamya M, Petersen M, Havlir D, Charlebois ED
• Men "missing" from population-based HIV testing: insights from qualitative research.
  AIDS care 2016 Camlin CS, Ssemmondo E, Chamie G, El Ayadi AM, Kwarisiima D, Sang N, Kabami J, Charlebois E, Petersen M, Clark TD, Bukusi EA, Cohen CR, R Kamya M, Havlir D, SEARCH Collaboration
• Occupational Exposure to PM2.5 and Incidence of Ischemic Heart Disease: Longitudinal Targeted Minimum Loss-based Estimation.
  Epidemiology (Cambridge, Mass.) 2015 Brown DM, Petersen M, Costello S, Noth EM, Hammond K, Cullen M, Laan Mv, Eisen E
• The Impact of Different CD4 Cell-Count Monitoring and Switching Strategies on Mortality in HIV-Infected African Adults on Antiretroviral Therapy: An Application of Dynamic Marginal Structural Models.
  American journal of epidemiology 2015 Ford D, Robins JM, Petersen ML, Gibb DM, Gilks CF, Mugyenyi P, Grosskurth H, Hakim J, Katabira E, Babiker AG, Walker AS, DART Trial Team
• Evaluating the Impact of Zimbabwe's Prevention of Mother-to-Child HIV Transmission Program: Population-Level Estimates of HIV-Free Infant Survival Pre-Option A.
  PloS one 2015 Buzdugan R, McCoy SI, Watadzaushe C, Kang Dufour MS, Petersen M, Dirawo J, Mushavi A, Mujuru HA, Mahomva A, Musarandega R, Hakobyan A, Mugurungi O, Cowan FM, Padian NS
• Super Learner Analysis of Electronic Adherence Data Improves Viral Prediction and May Provide Strategies for Selective HIV RNA Monitoring.
  Journal of acquired immune deficiency syndromes (1999) 2015 Petersen ML, LeDell E, Schwab J, Sarovar V, Gross R, Reynolds N, Haberer JE, Goggin K, Golin C, Arnsten J, Rosen MI, Remien RH, Etoori D, Wilson IB, Simoni JM, Erlen JA, van der Laan MJ, Liu H, …
• Assumption Trade-Offs When Choosing Identification Strategies for Pre-Post Treatment Effect Estimation: An Illustration of a Community-Based Intervention in Madagascar.
  Journal of causal inference 2015 Weber AM, van der Laan MJ, Petersen ML
• Spatiotemporal prediction of fine particulate matter during the 2008 northern California wildfires using machine learning.
  Environmental science & technology 2015 Reid CE, Jerrett M, Petersen ML, Pfister GG, Morefield PE, Tager IB, Raffuse SM, Balmes JR
• Computationally efficient confidence intervals for cross-validated area under the ROC curve estimates.
  Electronic journal of statistics 2015 LeDell E, Petersen M, van der Laan M
• Improving propensity score estimators' robustness to model misspecification using super learner.
  American journal of epidemiology 2014 Pirracchio R, Petersen ML, van der Laan M
• Adaptive pair-matching in randomized trials with unbiased and efficient effect estimation.
  Statistics in medicine 2014 Balzer LB, Petersen ML, van der Laan MJ, SEARCH Consortium
• Mortality prediction in intensive care units with the Super ICU Learner Algorithm (SICULA): a population-based study.
  The Lancet. Respiratory medicine 2014 Pirracchio R, Petersen ML, Carone M, Rigon MR, Chevret S, van der Laan MJ
• Network meta-analyses: powerful but not without perils.
  The lancet. HIV 2014 Geng EH, Petersen ML
• Commentary: Applying a causal road map in settings with time-dependent confounding.
  Epidemiology (Cambridge, Mass.) 2014 Petersen ML
• Delayed switch of antiretroviral therapy after virologic failure associated with elevated mortality among HIV-infected adults in Africa.
  AIDS (London, England) 2014 Petersen ML, Tran L, Geng EH, Reynolds SJ, Kambugu A, Wood R, Bangsberg DR, Yiannoutsos CT, Deeks SG, Martin JN
• Observational research on NCDs in HIV-positive populations: conceptual and methodological considerations.
  Journal of acquired immune deficiency syndromes (1999) 2014 Petersen M, Yiannoutsos CT, Justice A, Egger M
• Targeted Maximum Likelihood Estimation for Dynamic and Static Longitudinal Marginal Structural Working Models.
  Journal of causal inference 2014 Petersen M, Schwab J, Gruber S, Blaser N, Schomaker M, van der Laan M
• Causal models and learning from data: integrating causal modeling and statistical estimation.
  Epidemiology (Cambridge, Mass.) 2014 Petersen ML, van der Laan MJ
• Changes in population HIV RNA levels in Mbarara, Uganda, during scale-up of HIV antiretroviral therapy access.
  Journal of acquired immune deficiency syndromes (1999) 2014 Jain V, Byonanebye DM, Liegler T, Kwarisiima D, Chamie G, Kabami J, Petersen ML, Balzer LB, Clark TD, Black D, Thirumurthy H, Geng EH, Charlebois ED, Amanyire G, Kamya MR, Havlir DV, SEARCH …
• Evaluating linkage to care for hypertension after community-based screening in rural Uganda.
  Tropical medicine & international health : TM & IH 2014 Kotwani P, Balzer L, Kwarisiima D, Clark TD, Kabami J, Byonanebye D, Bainomujuni B, Black D, Chamie G, Jain V, Thirumurthy H, Kamya MR, Geng EH, Petersen ML, Havlir DV, Charlebois ED, SEARCH …
• Uptake of community-based HIV testing during a multi-disease health campaign in rural Uganda.
  PloS one 2014 Chamie G, Kwarisiima D, Clark TD, Kabami J, Jain V, Geng E, Balzer LB, Petersen ML, Thirumurthy H, Charlebois ED, Kamya MR, Havlir DV
• Epidemiology and awareness of hypertension in a rural Ugandan community: a cross-sectional study.
  BMC public health 2013 Kotwani P, Kwarisiima D, Clark TD, Kabami J, Geng EH, Jain V, Chamie G, Petersen ML, Thirumurthy H, Kamya MR, Charlebois ED, Havlir DV, SEARCH Collaboration
• Incidence, risk factors and prediction of post-operative acute kidney injury following cardiac surgery for active infective endocarditis: an observational study.
  Critical care (London, England) 2013 Legrand M, Pirracchio R, Rosa A, Petersen ML, Van der Laan M, Fabiani JN, Fernandez-gerlinger MP, Podglajen I, Safran D, Cholley B, Mainardi JL
• Estimating the Effect of a Community-Based Intervention with Two Communities.
  Journal of causal inference 2013 van der Laan MJ, Petersen M, Zheng W
• Improved employment and education outcomes in households of HIV-infected adults with high CD4 cell counts: evidence from a community health campaign in Uganda.
  AIDS (London, England) 2013 Thirumurthy H, Chamie G, Jain V, Kabami J, Kwarisiima D, Clark TD, Geng E, Petersen ML, Charlebois ED, Kamya MR, Havlir DV, SEARCH Collaboration
• Assessment of population-based HIV RNA levels in a rural east African setting using a fingerprick-based blood collection method.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2012 Jain V, Liegler T, Kabami J, Chamie G, Clark TD, Black D, Geng EH, Kwarisiima D, Wong JK, Abdel-Mohsen M, Sonawane N, Aweeka FT, Thirumurthy H, Petersen ML, Charlebois ED, Kamya MR, Havlir DV, SEARCH …
• ADAPTIVE MATCHING IN RANDOMIZED TRIALS AND OBSERVATIONAL STUDIES.
  Journal of statistical research 2012 van der Laan MJ, Balzer LB, Petersen ML
• Leveraging rapid community-based HIV testing campaigns for non-communicable diseases in rural Uganda.
  PloS one 2012 Chamie G, Kwarisiima D, Clark TD, Kabami J, Jain V, Geng E, Petersen ML, Thirumurthy H, Kamya MR, Havlir DV, Charlebois ED, SEARCH Collaboration
• Acquisition of GB virus type C and lower mortality in patients with advanced HIV disease.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2012 Vahidnia F, Petersen M, Stapleton JT, Rutherford GW, Busch M, Custer B
• A causal framework for understanding the effect of losses to follow-up on epidemiologic analyses in clinic-based cohorts: the case of HIV-infected patients on antiretroviral therapy in Africa.
  American journal of epidemiology 2012 Geng EH, Glidden DV, Bangsberg DR, Bwana MB, Musinguzi N, Nash D, Metcalfe JZ, Yiannoutsos CT, Martin JN, Petersen ML
• The causal effect of switching to second-line ART in programmes without access to routine viral load monitoring.
  AIDS (London, England) 2012 Gsponer T, Petersen M, Egger M, Phiri S, Maathuis MH, Boulle A, Musondad P, Tweya H, Peter K, Chi BH, Keiser O, IeDEA Southern Africa
• The effect of AIDS Clinical Trials Group Protocol 5164 on the time from Pneumocystis jirovecii pneumonia diagnosis to antiretroviral initiation in routine clinical practice: a case study of diffusion, dissemination, and implementation.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2011 Geng EH, Kahn JS, Chang OC, Hare CB, Christopoulos KA, Jones D, Petersen ML, Deeks SG, Havlir DV, Gandhi M
• Compound treatments, transportability, and the structural causal model: the power and simplicity of causal graphs.
  Epidemiology (Cambridge, Mass.) 2011 Petersen ML
• A marginal structural model to estimate the causal effect of antidepressant medication treatment on viral suppression among homeless and marginally housed persons with HIV.
  Archives of general psychiatry 2010 Tsai AC, Weiser SD, Petersen ML, Ragland K, Kushel MB, Bangsberg DR
• Retention in care among HIV-infected patients in resource-limited settings: emerging insights and new directions.
  Current HIV/AIDS reports 2010 Geng EH, Nash D, Kambugu A, Zhang Y, Braitstein P, Christopoulos KA, Muyindike W, Bwana MB, Yiannoutsos CT, Petersen ML, Martin JN
• Diagnosing and responding to violations in the positivity assumption.
  Statistical methods in medical research 2010 Petersen ML, Porter KE, Gruber S, Wang Y, van der Laan MJ
• Biomarker discovery using targeted maximum-likelihood estimation: application to the treatment of antiretroviral-resistant HIV infection.
  Statistics in medicine 2009 Bembom O, Petersen ML, Rhee SY, Fessel WJ, Sinisi SE, Shafer RW, van der Laan MJ
• Long-term consequences of the delay between virologic failure of highly active antiretroviral therapy and regimen modification.
  AIDS (London, England) 2008 Petersen ML, van der Laan MJ, Napravnik S, Eron JJ, Moore RD, Deeks SG
• Cross-Validated Bagged Learning.
  Journal of multivariate analysis 2008 Petersen ML, Molinaro AM, Sinisi SE, van der Laan MJ
• Direct effect models.
  The international journal of biostatistics 2008 van der Laan MJ, Petersen ML
• Individualized treatment rules: generating candidate clinical trials.
  Statistics in medicine 2007 Petersen ML, Deeks SG, van der Laan MJ
• Petersen et al. Respond to "Effect Modification by Time-varying Covariates"
  American journal of epidemiology 2007 Petersen ML, van der Laan MJ
• History-adjusted marginal structural models for estimating time-varying effect modification.
  American journal of epidemiology 2007 Petersen ML, Deeks SG, Martin JN, van der Laan MJ
• Pillbox organizers are associated with improved adherence to HIV antiretroviral therapy and viral suppression: a marginal structural model analysis.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2007 Petersen ML, Wang Y, van der Laan MJ, Guzman D, Riley E, Bangsberg DR
• Hospital-based surveillance of meningococcal meningitis in Salvador, Brazil.
  Transactions of the Royal Society of Tropical Medicine and Hygiene 2007 Cordeiro SM, Neves AB, Ribeiro CT, Petersen ML, Gouveia EL, Ribeiro GS, Lôbo TS, Reis JN, Salgado KM, Reis MG, Ko AI
• Virologic efficacy of boosted double versus boosted single protease inhibitor therapy.
  AIDS (London, England) 2007 Petersen ML, Wang Y, van der Laan MJ, Rhee SY, Shafer RW, Fessel WJ
• Super learning: an application to the prediction of HIV-1 drug resistance.
  Statistical applications in genetics and molecular biology 2007 Sinisi SE, Polley EC, Petersen ML, Rhee SY, van der Laan MJ
• Causal effect models for realistic individualized treatment and intention to treat rules.
  The international journal of biostatistics 2007 van der Laan MJ, Petersen ML
• Statistical learning of origin-specific statically optimal individualized treatment rules.
  The international journal of biostatistics 2007 van der Laan MJ, Petersen ML
• Assessing the effectiveness of antiretroviral adherence interventions. Using marginal structural models to replicate the findings of randomized controlled trials.
  Journal of acquired immune deficiency syndromes (1999) 2006 Petersen ML, Wang Y, van der Laan MJ, Bangsberg DR
• Estimation of direct causal effects.
  Epidemiology (Cambridge, Mass.) 2006 Petersen ML, Sinisi SE, van der Laan MJ
• Assessing HIV resistance in developing countries: Brazil as a case study.
  Revista panamericana de salud publica = Pan American journal of public health 2006 Petersen ML, Boily MC, Bastos FI
• Adherence to antiretroviral therapy: a qualitative study with physicians from Rio de Janeiro, Brazil.
  Cadernos de saude publica 2005 Malta M, Petersen ML, Clair S, Freitas F, Bastos FI
• Highly active antiretroviral therapy in Brazil: the challenge of universal access in a context of social inequality.
  Revista panamericana de salud publica = Pan American journal of public health 2004 Hacker MA, Petersen ML, Enriquez M, Bastos FI