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Since 1971, the Protein Data Bank archive (PDB) has served as the single repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.

Celebrating 50 Years of the PDB

The Worldwide PDB (wwPDB) organization manages the PDB archive and ensures that the PDB is freely and publicly available to the global community.

Celebrating 20 Years of the wwPDB Partnership

 

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Vision and Mission

Vision

Sustain freely accessible, interoperating Core Archives of structure data and metadata for biological macromolecules as an enduring public good to promote basic and applied research and education across the sciences.

Mission

  • Manage the wwPDB Core Archives as a public good according to the FAIR Principles.
  • Provide expert deposition, validation, biocuration, and remediation services at no charge to Data Depositors worldwide.
  • Ensure universal open access to public domain structural biology data with no limitations on usage.
  • Develop and promote community-endorsed data standards for archiving and exchange of global structural biology data.
wwPDB Members
Electron Microscopy Data Bank

Collects 3D volumes & associated information of macromolecular complexes & subcellular structures from electron cryo microscopy & electron cryo tomography; develops resources for searching, data mining, analyzing, validating & visualizing data.

Protein Data Bank Japan

Supports browsing in multiple languages such as Japanese, Chinese, and Korean; SeSAW identifies functionally or evolutionarily conserved motifs by locating and annotating sequence and structural similarities, tools for bioinformaticians, and more.

Biological Magnetic Resonance Data Bank

Collects NMR data from any experiment and captures assigned chemical shifts, coupling constants, and peak lists for a variety of macromolecules; contains derived annotations such as hydrogen exchange rates, pKa values, and relaxation parameters.

Research Collaboratory for Structural Bioinformatics Protein Data Bank

Simple and advanced searching for macromolecules and ligands, flexible APIs for programmatic users, specialized 1D-3D visualization tools, Molecule of the Month and other training resources at PDB-101, and more.

Protein Data Bank in Europe

Rich information about all PDB entries, multiple search and browse facilities, advanced services including PDBePISA, PDBeFold and PDBeMotif, advanced visualisation and validation of NMR and EM structures, tools for bioinformaticians.

wwPDB Resources

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Information for Journals

Cite wwPDB:

Nature Structural Biology 10, 980 (2003)
doi: 10.1038/nsb1203-980

Cite the PDB archive:

Nucleic Acids Research (2019), doi: 10.1093/nar/gky949
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News & Announcements

10/16/2024

Congratulations to David Baker, who was recognized for computational protein design, and to Demis Hassabis and John M. Jumper, who were recognized for protein structure prediction. These achievements also celebrate the work of the PDB depositor community and the PDB archive that underpinned development of their prediction methods.

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10/15/2024

Contributions to public preprint archives that mention PDB/EMDB/BMRB entry IDs are deemed by the wwPDB to be publications

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10/08/2024

Protein chemical modifications (PCMs) and post translational modifications (PTMs) annotation is now included in CCD files, and updated atomic coordinate files are being rolled out.

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